Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BP422_RS24680 Genome accession   NZ_CP018145
Coordinates   5221014..5221967 (-) Length   317 a.a.
NCBI ID   WP_088909945.1    Uniprot ID   A0A220MPA7
Organism   Brevibacillus formosus strain NF2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5216014..5226967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS24655 (BP422_24040) - 5216398..5217300 (+) 903 WP_088909940.1 ABC transporter ATP-binding protein -
  BP422_RS24660 (BP422_24045) - 5217505..5218161 (+) 657 WP_088909941.1 DJ-1/PfpI family protein -
  BP422_RS24665 (BP422_24050) - 5218229..5219215 (-) 987 WP_088909942.1 siderophore ABC transporter substrate-binding protein -
  BP422_RS24670 (BP422_24055) - 5219324..5220082 (-) 759 WP_088909943.1 ABC transporter ATP-binding protein -
  BP422_RS24675 (BP422_24060) - 5220079..5221017 (-) 939 WP_088909944.1 iron chelate uptake ABC transporter family permease subunit -
  BP422_RS24680 (BP422_24065) ceuB 5221014..5221967 (-) 954 WP_088909945.1 ABC transporter permease Machinery gene
  BP422_RS24685 (BP422_24070) - 5222216..5222980 (-) 765 WP_088909946.1 DUF4097 family beta strand repeat-containing protein -
  BP422_RS24690 (BP422_24075) - 5223179..5223853 (+) 675 WP_088909947.1 Crp/Fnr family transcriptional regulator -
  BP422_RS24695 (BP422_24080) - 5223940..5224302 (+) 363 WP_088909948.1 carboxymuconolactone decarboxylase family protein -
  BP422_RS24700 (BP422_24085) - 5224497..5224853 (+) 357 WP_088909949.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35149.46 Da        Isoelectric Point: 9.7952

>NTDB_id=206382 BP422_RS24680 WP_088909945.1 5221014..5221967(-) (ceuB) [Brevibacillus formosus strain NF2]
MKKRYLVIALILLSFVSLFIGVKNISPWDLFNLTDDKVQVLWISRIPRLISIIIAGISMSIVGLIMQQLTRNKFVSPTTA
GTEDSVRFGILISLLVFVDAGPWVKLLVAFAFSLLGTFIFMKILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKHDLM
QNMSAWLHGDFSTIMKGSYELLYISIPLVIIAYLYANKFTIAGMGEEFAINLGLNYKQVVNIGLIIVACVTSVVILTVGA
IPFLGLIIPNLVTLYLGDNLKKSLSHTALLGAVFVLVCDILGRLIIFPYEISIGLMVGVIGSGVFVYLLMRRKAYEQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=206382 BP422_RS24680 WP_088909945.1 5221014..5221967(-) (ceuB) [Brevibacillus formosus strain NF2]
ATGAAAAAGAGATATTTGGTTATAGCACTTATTTTGCTCTCGTTCGTTTCACTTTTTATAGGTGTCAAAAATATATCGCC
ATGGGATCTGTTCAATCTCACAGATGACAAAGTGCAAGTGCTGTGGATCAGCCGGATTCCGCGATTAATCAGTATCATCA
TCGCAGGGATAAGCATGAGTATCGTCGGCTTGATCATGCAGCAGTTGACCCGAAACAAGTTTGTTTCGCCGACTACTGCG
GGGACAGAGGATTCCGTTCGCTTCGGAATATTGATCTCTCTCTTGGTATTCGTCGATGCCGGTCCTTGGGTAAAACTGCT
CGTTGCTTTTGCTTTCTCTCTCTTGGGAACGTTTATCTTTATGAAGATCCTTGACCGAATCAAATTCAAGGACTCCATTT
TCATCCCGTTGGTGGGATTGATGTTTGGGAATATCGTCGGTTCCATTACGACGTTTTTCGCTTATAAACACGATTTGATG
CAAAACATGTCTGCTTGGTTGCATGGAGATTTCTCTACCATTATGAAAGGCAGCTACGAGCTTTTGTACATAAGCATTCC
GCTGGTGATTATCGCCTACTTGTACGCGAACAAGTTCACGATTGCCGGAATGGGTGAGGAGTTTGCCATCAACCTCGGGT
TGAATTACAAGCAGGTCGTCAATATCGGACTGATCATTGTTGCTTGTGTGACATCGGTTGTGATTCTCACGGTAGGAGCG
ATTCCTTTTTTGGGACTCATCATACCGAATCTGGTTACGCTGTACCTGGGGGACAACCTGAAGAAAAGCTTGTCTCATAC
CGCTTTGCTTGGTGCGGTGTTTGTACTGGTCTGTGATATCCTGGGACGCCTCATCATCTTCCCGTACGAGATTTCTATCG
GCTTGATGGTTGGGGTCATAGGCAGCGGGGTATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220MPA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.272

98.738

0.546

Multiple sequence alignment