Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BP422_RS07135 Genome accession   NZ_CP018145
Coordinates   1425689..1427413 (+) Length   574 a.a.
NCBI ID   WP_047068864.1    Uniprot ID   A0A0H0SML2
Organism   Brevibacillus formosus strain NF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1420689..1432413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS07115 (BP422_06910) dxs 1421530..1423416 (+) 1887 WP_088907133.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BP422_RS07120 (BP422_06915) - 1423413..1424231 (+) 819 WP_088907134.1 TlyA family RNA methyltransferase -
  BP422_RS07125 (BP422_06920) - 1424360..1425217 (+) 858 WP_088907135.1 NAD(+)/NADH kinase -
  BP422_RS07130 (BP422_06925) ahrC 1425223..1425672 (+) 450 WP_047068862.1 transcriptional regulator AhrC/ArgR -
  BP422_RS07135 (BP422_06930) recN 1425689..1427413 (+) 1725 WP_047068864.1 DNA repair protein RecN Machinery gene
  BP422_RS07140 (BP422_06935) spoIVB 1427654..1428988 (+) 1335 WP_088907136.1 SpoIVB peptidase -
  BP422_RS07145 (BP422_06940) spo0A 1429248..1430036 (+) 789 WP_007720793.1 sporulation transcription factor Spo0A -
  BP422_RS07155 (BP422_06950) - 1430631..1430957 (-) 327 WP_088907138.1 hypothetical protein -
  BP422_RS07160 - 1431078..1431401 (-) 324 WP_236841316.1 hypothetical protein -
  BP422_RS31945 - 1432061..1432186 (+) 126 WP_236841317.1 AlwI family type II restriction endonuclease -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64684.61 Da        Isoelectric Point: 4.7198

>NTDB_id=206361 BP422_RS07135 WP_047068864.1 1425689..1427413(+) (recN) [Brevibacillus formosus strain NF2]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAK
QEYSTLYTAYRKTKQDLERMARNDRELVQRIDLLQYQLDEIEAATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEMVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQELAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=206361 BP422_RS07135 WP_047068864.1 1425689..1427413(+) (recN) [Brevibacillus formosus strain NF2]
ATGCTAGTGGAACTCTCAATCCGAAATTTTGCCATCATCAAATCAGTGACGGTCTCATTTCAAAAAGGCTTAAACATCCT
GACTGGGGAGACTGGTGCCGGTAAATCCATCATTATCGATGCGCTAGGACTGTTGTTAGGGGGCCGGGCTTCGGCTGATT
TTGTCCGTTACGGTGAGCCTCGTGCAGAAGTGGAAGGGCTGTTTGAATTGCCGCCTGGTCACCCCGGACTTGACGTTTGT
AAGAATGTCGGCGTCCAGATTGAGCAAGACGGTATGCTTGTGGTACGCCGAGATATATCGAATCAAGGGAAGAGTATCAT
TCGAATCAATGGCCAGCTCGTAACTCTCGCGATGCTGCGTGAGTTAGGGCCGTGGCTGGTTACGGTGCATGGACAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTCGATGCATACGGGGAAAGTGCGTTGGGAGCTGCGAAG
CAAGAGTACAGTACCCTGTATACTGCGTACCGTAAAACAAAGCAAGATCTGGAGCGCATGGCACGAAATGATCGGGAGCT
GGTGCAGCGTATCGATCTATTGCAATATCAACTCGATGAAATTGAGGCGGCAACCCTCACGCCTGGTGAAGACGAGAAGC
TCATGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGCGCATTGCATGGT
GACCAGAAGGGCATGGATTGGTTAGGACATGCGATGGGCGAGCTTGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGATGGTCCAATCGGCCTATTATCAGATAGAAGATGTGGTTCATAACCTACGTCAATTGTCGTACCAAATGG
ATTTTGAACCGGAGCAGCTGGCAGAAGTAGAACGTCGCCTTGATCAAATCCAGTCGTTAAAACGCAAGTATGGCAAAAGT
GTAGACGATATTTTGGAGTACGCAGCCACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGATCGCCTTCAGCA
GGTGGAAAAGCAATTGCAGGAGCTTGCAGCCGATTTAGCAGTGGAGGCATTGGAGTTATCGGTTATTCGTTCCGAATGTG
CAGGAAAACTCGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGCGTGCTCGTTTTGCCATCGACGTCAGA
CAGACACCGGATGATGACGGGGTAGAAATCGACGGAATCAAGCGCTTCGTAGACGCGAACGGAATGGATCAGATCGAGTT
TTTAATCTCACCTAACCCCGGTGAACCATTGCGTCCCTTGGCGAAGATTGCTTCTGGGGGAGAGCTGTCTCGTGTCATGC
TGGCCATTAAAACGATTTTGGCGGGCACTGATCAAGTGGAGACCCTCATTTTTGATGAAGTCGACACGGGTGTAAGCGGA
AGAGCCGCTCAAGCGATAGCAGAAAAGCTCGCCCGGGTCGCTGGGCAGCGCCAGGTCCTGTGCATCACGCACTTGCCACA
GGTCGCATCCATGGCAGACGCGCATTTTCTGATCAAAAAGGAAATGAGCGAGAATGAAACAGAGACGCGGGTGAATCGTT
TGTCTGATGATGAACGGGTATCAGAGCTGGCTCGCATGCTAAGCGGGGCAGAGGTAACTGCGAAAACAGAAGAACATGCA
CGCGAGATGATCCTTCTCGGCCGTGAACGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H0SML2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.264

100

0.484

Multiple sequence alignment