Detailed information NTG0020635

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VC_RS12895
• Genome accession: NC_002505
• Coordinates: 2844038..2845045 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor str. N16961
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2839038..2850045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC_RS12870 (VC2672)	rraA	2839613..2840128 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
VC_RS12875 (VC2673)	-	2840203..2841120 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VC_RS12880 (VC2674)	hslU	2841224..2842555 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
VC_RS12885 (VC2675)	hslV	2842621..2843178 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VC_RS12890 (VC2676)	-	2843315..2843866 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
VC_RS12895 (VC2677)	cytR	2844038..2845045 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
VC_RS12900 (VC2678)	priA	2845351..2847555 (-)	2205	WP_001247858.1	primosomal protein N'	-
VC_RS12905 (VC2679)	rpmE	2847810..2848028 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
VC_RS12910 (VC2681)	-	2848336..2849613 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VC_RS12915 (VC2682)	metJ	2849724..2850041 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=20635 VC_RS12895 WP_000224452.1 2844038..2845045(-) (cytR) [Vibrio cholerae O1 biovar El Tor str. N16961]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=20635 VC_RS12895 WP_000224452.1 2844038..2845045(-) (cytR) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904