Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ54_RS00610 Genome accession   NZ_CP023359
Coordinates   119531..120199 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 1943     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 114531..125199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ54_RS00575 (CNQ54_00575) yicC 114550..115413 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CNQ54_RS00585 (CNQ54_00585) rph 115540..116256 (+) 717 WP_001247093.1 ribonuclease PH -
  CNQ54_RS00590 (CNQ54_00590) pyrE 116322..116963 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  CNQ54_RS00595 (CNQ54_00595) slmA 117000..117596 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CNQ54_RS00600 (CNQ54_00600) dut 117703..118161 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CNQ54_RS00605 (CNQ54_00605) coaBC 118139..119359 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNQ54_RS00610 (CNQ54_00610) radC 119531..120199 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CNQ54_RS00615 (CNQ54_00615) rpmB 120416..120652 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNQ54_RS00620 (CNQ54_00620) rpmG 120673..120840 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNQ54_RS00625 (CNQ54_00625) mutM 120938..121747 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNQ54_RS00630 (CNQ54_00630) coaD 121786..122265 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CNQ54_RS00635 (CNQ54_00635) waaA 122273..123550 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNQ54_RS00640 (CNQ54_00640) rfaQ 123963..125021 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=206280 CNQ54_RS00610 WP_001298959.1 119531..120199(+) (radC) [Escherichia coli strain 1943]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206280 CNQ54_RS00610 WP_001298959.1 119531..120199(+) (radC) [Escherichia coli strain 1943]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496