Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ55_RS10595 Genome accession   NZ_CP023357
Coordinates   2148936..2149412 (-) Length   158 a.a.
NCBI ID   WP_001186199.1    Uniprot ID   Q83W77
Organism   Escherichia coli strain 317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2143936..2154412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ55_RS10550 (CNQ55_10550) sbmC 2144431..2144904 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  CNQ55_RS10555 (CNQ55_10555) yeeA 2145102..2146160 (+) 1059 WP_001200890.1 FUSC family protein -
  CNQ55_RS10560 (CNQ55_10560) tmaR 2146332..2146661 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ55_RS10565 (CNQ55_10565) - 2146762..2146944 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CNQ55_RS10570 (CNQ55_10570) - 2146998..2147144 (+) 147 Protein_1969 transposase domain-containing protein -
  CNQ55_RS26350 - 2147433..2147513 (-) 81 Protein_1970 hypothetical protein -
  CNQ55_RS10575 (CNQ55_10575) yeeW 2147559..2147753 (-) 195 WP_000988601.1 DUF5983 family protein -
  CNQ55_RS10580 (CNQ55_10580) cbtA 2147750..2148124 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CNQ55_RS10585 (CNQ55_10585) cbeA 2148213..2148566 (-) 354 WP_198319677.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ55_RS10590 (CNQ55_10590) yeeT 2148646..2148867 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  CNQ55_RS10595 (CNQ55_10595) radC 2148936..2149412 (-) 477 WP_001186199.1 RadC family protein Machinery gene
  CNQ55_RS10600 (CNQ55_10600) - 2149428..2149901 (-) 474 WP_021552834.1 antirestriction protein -
  CNQ55_RS10605 (CNQ55_10605) - 2150164..2150985 (-) 822 WP_001234571.1 DUF932 domain-containing protein -
  CNQ55_RS10615 (CNQ55_10615) - 2151206..2151616 (-) 411 WP_000846704.1 hypothetical protein -
  CNQ55_RS10620 (CNQ55_10620) - 2151632..2152309 (-) 678 WP_001362823.1 hypothetical protein -
  CNQ55_RS10625 (CNQ55_10625) - 2152445..2153515 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17734.36 Da        Isoelectric Point: 7.6152

>NTDB_id=206232 CNQ55_RS10595 WP_001186199.1 2148936..2149412(-) (radC) [Escherichia coli strain 317]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206232 CNQ55_RS10595 WP_001186199.1 2148936..2149412(-) (radC) [Escherichia coli strain 317]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83W77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment