Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CNQ55_RS07160 Genome accession   NZ_CP023357
Coordinates   1438432..1438947 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 317     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433432..1443947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ55_RS07115 (CNQ55_07115) csrA 1434422..1434607 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CNQ55_RS07145 (CNQ55_07145) yqaB 1435662..1436228 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CNQ55_RS07150 (CNQ55_07150) yqaA 1436225..1436653 (+) 429 WP_001287454.1 YqaA family protein -
  CNQ55_RS07155 (CNQ55_07155) gshA 1436726..1438282 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CNQ55_RS07160 (CNQ55_07160) luxS 1438432..1438947 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CNQ55_RS07165 (CNQ55_07165) emrB 1439011..1440549 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CNQ55_RS07170 (CNQ55_07170) emrA 1440566..1441738 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CNQ55_RS07175 (CNQ55_07175) emrR 1441865..1442395 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CNQ55_RS07180 (CNQ55_07180) ygaH 1442486..1442821 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  CNQ55_RS07185 (CNQ55_07185) ygaZ 1442811..1443548 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=206221 CNQ55_RS07160 WP_001130208.1 1438432..1438947(+) (luxS) [Escherichia coli strain 317]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=206221 CNQ55_RS07160 WP_001130208.1 1438432..1438947(+) (luxS) [Escherichia coli strain 317]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737