Detailed information NTG0206218

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ55_RS06810
• Genome accession: NZ_CP023357
• Coordinates: 1371208..1372200 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 317
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1366208..1377200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ55_RS06780 (CNQ55_06780)	ispD	1366269..1366979 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNQ55_RS06785 (CNQ55_06785)	ispF	1366979..1367458 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ55_RS06790 (CNQ55_06790)	truD	1367455..1368504 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
CNQ55_RS06795 (CNQ55_06795)	surE	1368485..1369246 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ55_RS06800 (CNQ55_06800)	pcm	1369240..1369866 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
CNQ55_RS06805 (CNQ55_06805)	nlpD	1370051..1371145 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CNQ55_RS06810 (CNQ55_06810)	rpoS	1371208..1372200 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ55_RS06815 (CNQ55_06815)	-	1372378..1372929 (-)	552	WP_001179442.1	flavodoxin family protein	-
CNQ55_RS06820 (CNQ55_06820)	-	1373154..1374197 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
CNQ55_RS06825 (CNQ55_06825)	ygbN	1374340..1375704 (-)	1365	WP_000104433.1	GntP family transporter	-
CNQ55_RS06830 (CNQ55_06830)	ygbM	1375793..1376569 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206218 CNQ55_RS06810 WP_000081550.1 1371208..1372200(+) (rpoS) [Escherichia coli strain 317]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206218 CNQ55_RS06810 WP_000081550.1 1371208..1372200(+) (rpoS) [Escherichia coli strain 317]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715