Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ55_RS00585 Genome accession   NZ_CP023357
Coordinates   117178..117846 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112178..122846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ55_RS00550 (CNQ55_00550) yicC 112197..113060 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CNQ55_RS00560 (CNQ55_00560) rph 113187..113903 (+) 717 WP_001247094.1 ribonuclease PH -
  CNQ55_RS00565 (CNQ55_00565) pyrE 113969..114610 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CNQ55_RS00570 (CNQ55_00570) slmA 114647..115243 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  CNQ55_RS00575 (CNQ55_00575) dut 115350..115808 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CNQ55_RS00580 (CNQ55_00580) coaBC 115786..117006 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNQ55_RS00585 (CNQ55_00585) radC 117178..117846 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CNQ55_RS00590 (CNQ55_00590) rpmB 118063..118299 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNQ55_RS00595 (CNQ55_00595) rpmG 118320..118487 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNQ55_RS00600 (CNQ55_00600) mutM 118585..119394 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNQ55_RS00605 (CNQ55_00605) coaD 119433..119912 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CNQ55_RS00610 (CNQ55_00610) waaA 119920..121197 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNQ55_RS00615 (CNQ55_00615) rfaQ 121610..122668 (+) 1059 WP_000360397.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=206192 CNQ55_RS00585 WP_001297375.1 117178..117846(+) (radC) [Escherichia coli strain 317]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206192 CNQ55_RS00585 WP_001297375.1 117178..117846(+) (radC) [Escherichia coli strain 317]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment