Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ56_RS22215 Genome accession   NZ_CP023353
Coordinates   4386489..4386965 (-) Length   158 a.a.
NCBI ID   WP_001439314.1    Uniprot ID   -
Organism   Escherichia coli strain 746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4381489..4391965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ56_RS22185 (CNQ56_22185) yjhU 4383062..4384048 (+) 987 Protein_4080 sugar-binding transcriptional regulator -
  CNQ56_RS22190 (CNQ56_22190) - 4384089..4385093 (-) 1005 WP_000471143.1 multidrug DMT transporter permease -
  CNQ56_RS22195 (CNQ56_22195) - 4385197..4385499 (-) 303 WP_019843007.1 class II aldolase/adducin family protein -
  CNQ56_RS27820 - 4385507..4385584 (-) 78 Protein_4083 TA system toxin CbtA family protein -
  CNQ56_RS22205 (CNQ56_22205) - 4385674..4386042 (-) 369 WP_019843008.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ56_RS22210 (CNQ56_22210) - 4386205..4386426 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CNQ56_RS22215 (CNQ56_22215) radC 4386489..4386965 (-) 477 WP_001439314.1 RadC family protein Machinery gene
  CNQ56_RS22220 (CNQ56_22220) - 4386981..4387451 (-) 471 WP_000855046.1 antirestriction protein -
  CNQ56_RS22225 (CNQ56_22225) - 4387545..4387790 (-) 246 WP_001183320.1 hypothetical protein -
  CNQ56_RS22230 (CNQ56_22230) - 4387790..4388608 (-) 819 WP_019843009.1 DUF932 domain-containing protein -
  CNQ56_RS22240 (CNQ56_22240) - 4388726..4388921 (-) 196 Protein_4090 DUF905 family protein -
  CNQ56_RS22245 (CNQ56_22245) - 4388992..4391838 (-) 2847 WP_075370621.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17723.38 Da        Isoelectric Point: 7.6543

>NTDB_id=206173 CNQ56_RS22215 WP_001439314.1 4386489..4386965(-) (radC) [Escherichia coli strain 746]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206173 CNQ56_RS22215 WP_001439314.1 4386489..4386965(-) (radC) [Escherichia coli strain 746]
ATGCAGCAGCTTTCTTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCTCTGCACCACAATGCAGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment