Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ56_RS10005 Genome accession   NZ_CP023353
Coordinates   1997300..1997776 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1992300..2002776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ56_RS09960 (CNQ56_09960) sbmC 1992793..1993266 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CNQ56_RS09965 (CNQ56_09965) yeeA 1993464..1994522 (+) 1059 WP_064770506.1 FUSC family protein -
  CNQ56_RS09970 (CNQ56_09970) tmaR 1994694..1995023 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ56_RS09975 (CNQ56_09975) - 1995124..1995306 (-) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  CNQ56_RS09980 (CNQ56_09980) - 1995360..1995506 (+) 147 Protein_1842 transposase domain-containing protein -
  CNQ56_RS27665 - 1995795..1995875 (-) 81 Protein_1843 hypothetical protein -
  CNQ56_RS09985 (CNQ56_09985) yeeW 1995921..1996115 (-) 195 WP_000988600.1 DUF5983 family protein -
  CNQ56_RS09990 (CNQ56_09990) - 1996177..1996485 (-) 309 Protein_1845 TA system toxin CbtA family protein -
  CNQ56_RS09995 (CNQ56_09995) cbeA 1996574..1996942 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CNQ56_RS10000 (CNQ56_10000) yeeT 1997016..1997237 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CNQ56_RS10005 (CNQ56_10005) radC 1997300..1997776 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CNQ56_RS10010 (CNQ56_10010) - 1997792..1998271 (-) 480 WP_000860081.1 antirestriction protein -
  CNQ56_RS10015 (CNQ56_10015) - 1998353..1999171 (-) 819 WP_001234378.1 DUF932 domain-containing protein -
  CNQ56_RS10020 (CNQ56_10020) - 1999382..1999792 (-) 411 WP_000846713.1 hypothetical protein -
  CNQ56_RS10025 (CNQ56_10025) - 1999808..2000491 (-) 684 WP_001361977.1 hypothetical protein -
  CNQ56_RS10030 (CNQ56_10030) - 2000627..2001697 (-) 1071 WP_064770521.1 patatin-like phospholipase family protein -
  CNQ56_RS10035 (CNQ56_10035) - 2001694..2002599 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=206146 CNQ56_RS10005 WP_001186773.1 1997300..1997776(-) (radC) [Escherichia coli strain 746]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206146 CNQ56_RS10005 WP_001186773.1 1997300..1997776(-) (radC) [Escherichia coli strain 746]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392