Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CNQ56_RS09950 Genome accession   NZ_CP023353
Coordinates   1989872..1991299 (-) Length   475 a.a.
NCBI ID   WP_074158036.1    Uniprot ID   -
Organism   Escherichia coli strain 746     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984872..1996299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ56_RS09925 (CNQ56_09925) yeeZ 1984927..1985751 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CNQ56_RS09930 (CNQ56_09930) yeeY 1985797..1986726 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CNQ56_RS27660 yoeI 1986941..1987003 (+) 63 WP_010723108.1 membrane protein YoeI -
  CNQ56_RS09935 (CNQ56_09935) plaP 1986993..1988351 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CNQ56_RS09940 (CNQ56_09940) tsuA 1988530..1989588 (+) 1059 WP_064770505.1 thiosulfate utilization transporter TsuA/YeeE -
  CNQ56_RS09945 (CNQ56_09945) tsuB 1989602..1989829 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CNQ56_RS09950 (CNQ56_09950) sbcB 1989872..1991299 (-) 1428 WP_074158036.1 exodeoxyribonuclease I Machinery gene
  CNQ56_RS09955 (CNQ56_09955) dacD 1991508..1992674 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CNQ56_RS09960 (CNQ56_09960) sbmC 1992793..1993266 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CNQ56_RS09965 (CNQ56_09965) yeeA 1993464..1994522 (+) 1059 WP_064770506.1 FUSC family protein -
  CNQ56_RS09970 (CNQ56_09970) tmaR 1994694..1995023 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ56_RS09975 (CNQ56_09975) - 1995124..1995306 (-) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  CNQ56_RS09980 (CNQ56_09980) - 1995360..1995506 (+) 147 Protein_1842 transposase domain-containing protein -
  CNQ56_RS27665 - 1995795..1995875 (-) 81 Protein_1843 hypothetical protein -
  CNQ56_RS09985 (CNQ56_09985) yeeW 1995921..1996115 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54555.90 Da        Isoelectric Point: 5.4720

>NTDB_id=206145 CNQ56_RS09950 WP_074158036.1 1989872..1991299(-) (sbcB) [Escherichia coli strain 746]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDIWPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=206145 CNQ56_RS09950 WP_074158036.1 1989872..1991299(-) (sbcB) [Escherichia coli strain 746]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTGGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment