Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   CNQ56_RS07665 Genome accession   NZ_CP023353
Coordinates   1507292..1509295 (-) Length   667 a.a.
NCBI ID   WP_001596056.1    Uniprot ID   -
Organism   Escherichia coli strain 746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1502292..1514295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ56_RS07650 (CNQ56_07650) aegA 1503398..1505377 (+) 1980 WP_001078843.1 formate-dependent uric acid utilization protein AegA -
  CNQ56_RS07655 (CNQ56_07655) nudK 1505445..1506020 (+) 576 WP_001314925.1 GDP-mannose pyrophosphatase NudK -
  CNQ56_RS07660 (CNQ56_07660) ypfG 1506146..1507189 (+) 1044 WP_001270526.1 DUF1176 domain-containing protein -
  CNQ56_RS07665 (CNQ56_07665) recP/tkt 1507292..1509295 (-) 2004 WP_001596056.1 transketolase Machinery gene
  CNQ56_RS07670 (CNQ56_07670) tal 1509315..1510265 (-) 951 WP_001003709.1 transaldolase -
  CNQ56_RS07680 (CNQ56_07680) maeB 1510554..1512833 (+) 2280 WP_001596055.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
  CNQ56_RS07685 (CNQ56_07685) eutS 1513125..1513460 (+) 336 WP_000356956.1 ethanolamine utilization microcompartment protein EutS -
  CNQ56_RS07690 (CNQ56_07690) eutP 1513473..1513952 (+) 480 WP_000820771.1 ethanolamine utilization acetate kinase EutP -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 73054.67 Da        Isoelectric Point: 6.1864

>NTDB_id=206140 CNQ56_RS07665 WP_001596056.1 1507292..1509295(-) (recP/tkt) [Escherichia coli strain 746]
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYD
LPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLTAQFNQPDHEIVDHFTYVFMGDGCLMEG
ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGEQAQQSWNEKFAAYKKAHPQL
AEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPLLPELLGGSADLAPSNLTIWKGSVSLKEDPA
GNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEM
EITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPA
DKLFPFFGFTAENIVAKAHKVLGVKGA

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=206140 CNQ56_RS07665 WP_001596056.1 1507292..1509295(-) (recP/tkt) [Escherichia coli strain 746]
ATGTCCCGAAAAGACCTTGCCAATGCGATTCGCGCACTCAGTATGGATGCGGTACAAAAAGCCAATTCTGGTCATCCCGG
CGCGCCGATGGGCATGGCTGATATTGCCGAAGTGCTGTGGAACGATTTTCTTAAACATAACCCCACCGACCCAACCTGGT
ATGATCGCGACCGCTTTATTCTTTCCAACGGTCACGCGTCGATGCTGCTCTACAGTTTGCTGCATCTGACCGGTTACGAC
CTGCCGCTGGAAGAGCTGAAGAACTTCCGTCAGTTGCATTCAAAAACCCCAGGTCACCCGGAGATTGGTTATACGCCAGG
TGTTGAAACCACCACCGGTCCACTTGGACAAGGTTTGGCGAACGCCGTCGGGCTGGCAATAGCAGAGCGTACACTGACGG
CGCAGTTTAATCAGCCAGACCATGAGATCGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGTCTGATGGAAGGT
ATCTCCCATGAAGTTTGTTCGCTGGCGGGCACGCTGGGGCTGGGCAAACTGATTGGTTTTTACGATCACAACGGTATTTC
CATCGACGGTGAAACCGAAGGCTGGTTTACCGACGATACAGCAAAACGTTTTGAAGCCTATCACTGGCATGTGATCCACG
AGATCGACGGCCACGATCCGCAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATT
ATCTGTCGTACAGTGATTGGCTTTGGATCGCCGAATAAAGCAGGTAAGGAAGAGGCGCATGGCGCACCGCTGGGGGAAGA
AGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAGATCCCTAAAGAGATTTATCACGCCTGGG
ATGCCCGCGAAAAAGGCGAACAAGCGCAGCAGAGCTGGAATGAGAAGTTTGCCGCCTATAAAAAGGCTCATCCGCAACTG
GCAGAAGAGTTTACCCGTCGGATGAGCGGCGGTTTACCGAAGGACTGGGAGAAAACGACTCAGAAATATATCAATGAGTT
GCAGGCGAATCCGGCGAAAATCGCCACCCGTAAGGCTTCGCAAAATACGCTTAACGCTTATGGCCCCTTGCTACCGGAGC
TGCTCGGCGGTTCGGCGGATCTGGCTCCCAGCAACCTGACCATCTGGAAAGGTTCTGTGTCGCTGAAGGAAGATCCGGCG
GGCAACTACATTCACTACGGGGTGCGTGAATTTGGCATGACCGCTATCGCCAACGGCATTGCGCACCACGGCGGCTTTGT
GCCGTATACCGCGACGTTCCTGATGTTTGTTGAATACGCCCGTAACGCCGCGCGGATGGCGGCACTGATGAAAGCGCGGC
AGATTATGGTTTATACCCACGACTCAATTGGCTTAGGGGAAGATGGTCCGACCCACCAGGCCGTTGAGCAACTGGCCAGT
CTGCGCTTGACGCCGAATTTCAGCACCTGGCGACCGTGCGATCAGGTGGAAGCGGCGGTAGGCTGGAAGCTTGCGGTTGA
GCGCCACAACGGACCGACGGCACTGATCCTCTCAAGGCAGAATCTGGCCCAGGTGGAACGTACGCCGGATCAGGTTAAAG
AGATTGCTCGTGGTGGTTATGTGTTGAAAGACAGCGGCGGCAAGCCGGATATTATTCTGATTGCCACCGGTTCAGAGATG
GAAATCACCCTGCAAGCGGCAGAGAAATTAGCAGGAGAAGGTCGCAATGTACGCGTAGTTTCGCTGCCCTCGACCGATAT
TTTCGACGCCCAGGATGAGGAATATCGGGAGTCGGTGTTGCCTTCTAACGTTGCGGCTCGCGTGGCGGTGGAAGCAGGCA
TCGCCGATTACTGGTACAAATATGTTGGTCTGAAAGGGGCAATTGTCGGGATGACCGGCTATGGGGAATCTGCTCCGGCA
GATAAGCTGTTCCCGTTCTTTGGCTTTACCGCCGAGAATATTGTGGCAAAAGCGCATAAGGTGCTGGGAGTGAAAGGTGC
CTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(539-654)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-523)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.344

98.801

0.468

Multiple sequence alignment