Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BMJ42_RS13425 Genome accession   NZ_CP018136
Coordinates   1857900..1858721 (-) Length   273 a.a.
NCBI ID   WP_000601691.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852900..1863721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS10245 (BMJ42_01947) - 1853387..1853704 (-) 318 WP_000615774.1 thioredoxin family protein -
  BMJ42_RS10250 (BMJ42_01948) - 1853701..1854000 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  BMJ42_RS13650 - 1854094..1854225 (+) 132 WP_001811306.1 hypothetical protein -
  BMJ42_RS13540 - 1854337..1854482 (-) 146 Protein_1903 cell wall-binding protein -
  BMJ42_RS10270 (BMJ42_01949) - 1854694..1855368 (-) 675 WP_000725722.1 LiaF transmembrane domain-containing protein -
  BMJ42_RS10275 (BMJ42_01950) - 1855374..1855820 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  BMJ42_RS10280 (BMJ42_01951) - 1855934..1856437 (-) 504 WP_000800939.1 phosphatase PAP2 family protein -
  BMJ42_RS10285 (BMJ42_01952) - 1856434..1856796 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  BMJ42_RS13420 (BMJ42_01953) rcrQ 1856862..1857893 (-) 1032 WP_000346795.1 ABC transporter ATP-binding protein Regulator
  BMJ42_RS13425 (BMJ42_01954) rcrP 1857900..1858721 (-) 822 WP_000601691.1 ABC transporter permease Regulator
  BMJ42_RS10295 (BMJ42_01955) - 1858738..1859208 (-) 471 WP_000360532.1 MarR family winged helix-turn-helix transcriptional regulator -
  BMJ42_RS10305 (BMJ42_01956) - 1859332..1860048 (-) 717 WP_000532874.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BMJ42_RS10315 (BMJ42_01957) - 1860823..1862079 (+) 1257 WP_000436627.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30487.14 Da        Isoelectric Point: 5.9135

>NTDB_id=206111 BMJ42_RS13425 WP_000601691.1 1857900..1858721(-) (rcrP) [Streptococcus pneumoniae strain SP49]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=206111 BMJ42_RS13425 WP_000601691.1 1857900..1858721(-) (rcrP) [Streptococcus pneumoniae strain SP49]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTAAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.193

100

0.597

Multiple sequence alignment