Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ56_RS00680 Genome accession   NZ_CP023353
Coordinates   144484..145152 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139484..150152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ56_RS00645 (CNQ56_00645) yicC 139503..140366 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CNQ56_RS00655 (CNQ56_00655) rph 140493..141209 (+) 717 WP_001247093.1 ribonuclease PH -
  CNQ56_RS00660 (CNQ56_00660) pyrE 141275..141916 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CNQ56_RS00665 (CNQ56_00665) slmA 141953..142549 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CNQ56_RS00670 (CNQ56_00670) dut 142656..143114 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CNQ56_RS00675 (CNQ56_00675) coaBC 143092..144312 (-) 1221 WP_000050171.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNQ56_RS00680 (CNQ56_00680) radC 144484..145152 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CNQ56_RS00685 (CNQ56_00685) rpmB 145369..145605 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNQ56_RS00690 (CNQ56_00690) rpmG 145626..145793 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNQ56_RS00695 (CNQ56_00695) mutM 145891..146700 (+) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNQ56_RS00700 (CNQ56_00700) coaD 146739..147218 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CNQ56_RS00705 (CNQ56_00705) waaA 147226..148503 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNQ56_RS00710 (CNQ56_00710) rfaQ 148916..149974 (+) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=206111 CNQ56_RS00680 WP_001297375.1 144484..145152(+) (radC) [Escherichia coli strain 746]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206111 CNQ56_RS00680 WP_001297375.1 144484..145152(+) (radC) [Escherichia coli strain 746]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGGGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment