Detailed information NTG0206067

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CJU63_RS15965
• Genome accession: NZ_CP023349
• Coordinates: 3060657..3061649 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC-2264
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3055657..3066649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJU63_RS15940 (CJU63_15940)	ygbN	3056311..3057675 (+)	1365	WP_000104429.1	GntP family transporter	-
CJU63_RS15945 (CJU63_15945)	-	3057715..3057951 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CJU63_RS15950 (CJU63_15950)	-	3057962..3059389 (-)	1428	WP_000863224.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CJU63_RS15955 (CJU63_15955)	-	3059389..3059982 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CJU63_RS15960 (CJU63_15960)	-	3060129..3060536 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
CJU63_RS15965 (CJU63_15965)	rpoS	3060657..3061649 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CJU63_RS15970 (CJU63_15970)	nlpD	3061712..3062806 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CJU63_RS15975 (CJU63_15975)	pcm	3062991..3063617 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CJU63_RS15980 (CJU63_15980)	surE	3063611..3064372 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
CJU63_RS15985 (CJU63_15985)	truD	3064353..3065402 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CJU63_RS15990 (CJU63_15990)	ispF	3065399..3065878 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CJU63_RS15995 (CJU63_15995)	ispD	3065878..3066588 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206067 CJU63_RS15965 WP_000081550.1 3060657..3061649(-) (rpoS) [Escherichia coli strain ETEC-2264]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206067 CJU63_RS15965 WP_000081550.1 3060657..3061649(-) (rpoS) [Escherichia coli strain ETEC-2264]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715