Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJU64_RS21660 Genome accession   NZ_CP023346
Coordinates   4154232..4154900 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain ETEC-2265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149232..4159900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU64_RS21630 (CJU64_21630) rfaQ 4149410..4150468 (-) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CJU64_RS21635 (CJU64_21635) waaA 4150881..4152158 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CJU64_RS21640 (CJU64_21640) coaD 4152166..4152645 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CJU64_RS21645 (CJU64_21645) mutM 4152684..4153493 (-) 810 WP_001114535.1 DNA-formamidopyrimidine glycosylase -
  CJU64_RS21650 (CJU64_21650) rpmG 4153591..4153758 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CJU64_RS21655 (CJU64_21655) rpmB 4153779..4154015 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CJU64_RS21660 (CJU64_21660) radC 4154232..4154900 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CJU64_RS21665 (CJU64_21665) coaBC 4155072..4156292 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CJU64_RS21670 (CJU64_21670) dut 4156270..4156728 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CJU64_RS21675 (CJU64_21675) slmA 4156835..4157431 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CJU64_RS21680 (CJU64_21680) pyrE 4157468..4158109 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  CJU64_RS21685 (CJU64_21685) rph 4158175..4158891 (-) 717 WP_001247093.1 ribonuclease PH -
  CJU64_RS21695 (CJU64_21695) yicC 4159018..4159881 (+) 864 WP_001399508.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=206006 CJU64_RS21660 WP_001298959.1 4154232..4154900(-) (radC) [Escherichia coli strain ETEC-2265]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206006 CJU64_RS21660 WP_001298959.1 4154232..4154900(-) (radC) [Escherichia coli strain ETEC-2265]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment