Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SMA_0025 Genome accession   HE613569
Coordinates   30772..31527 (+) Length   251 a.a.
NCBI ID   CCF01316.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25772..36527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0021 - 26248..26721 (+) 474 CCF01312.1 Rod shape-determining protein MreD -
  SMA_0022 - 26824..28302 (+) 1479 CCF01313.1 Secreted antigen GbpB/SagA/PcsB, putative peptidoglycan hydrolase -
  SMA_0023 prs1 28445..29413 (+) 969 CCF01314.1 Ribose-phosphate pyrophosphokinase 1 -
  SMA_0024 patA 29607..30782 (+) 1176 CCF01315.1 Aromatic amino acid aminotransferase gamma -
  SMA_0025 recO 30772..31527 (+) 756 CCF01316.1 DNA recombination and repair protein RecO Machinery gene
  SMA_0026 plsX 31675..32694 (+) 1020 CCF01317.1 Phosphate:acyl-ACP acyltransferase PlsX -
  SMA_0027 acpP 32710..32952 (+) 243 CCF01318.1 Acyl carrier protein -
  SMA_0028 purC 33077..33787 (+) 711 CCF01319.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29207.56 Da        Isoelectric Point: 6.6949

>NTDB_id=20599 SMA_0025 CCF01316.1 30772..31527(+) (recO) [Streptococcus macedonicus ACA-DC 198]
MQTKETYGLVLYNRNYRENDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTVAKFILKINDTGLSFIEDYKEVESFKE
INADLFKLSYASYVTALTDAAVPDGVADPQLFAFVNKTLSLMEEGLDYEILTNIFEIQLLERFGISLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYGKDDYRSHLDPNVLYLVDRFQAIHFDELKTISVKSEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGTWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=20599 SMA_0025 CCF01316.1 30772..31527(+) (recO) [Streptococcus macedonicus ACA-DC 198]
ATGCAAACTAAGGAAACTTATGGTCTTGTCCTCTATAATCGTAATTATCGTGAGAATGATAAGCTAGTCAAAATTTTTAC
AGAAACCAATGGAAAGCATATGTTTTTTGTTAAACATGCTGGTAAATCTCGGTTTAATTCTGTTATTCAACCGTTAACGG
TGGCAAAATTTATTTTAAAAATTAATGATACAGGTCTGTCTTTCATTGAAGATTATAAGGAAGTTGAGTCTTTTAAGGAA
ATTAATGCAGATTTGTTTAAGTTGTCCTATGCTTCTTATGTGACAGCATTGACGGATGCAGCTGTGCCAGATGGTGTGGC
AGACCCGCAGTTGTTTGCATTTGTTAATAAGACGCTTTCTTTAATGGAAGAGGGACTTGACTACGAAATTTTGACTAATA
TTTTTGAGATTCAACTTTTAGAACGATTTGGTATTAGTCTTAATTTTCATGAGTGTGCTTTTTGTCATCGGGTTGGATTG
CCCTTTGACTTTTCGCACAAATATTCTGGTCTGCTTTGTCCAGAGCATTATGGTAAAGATGATTATCGCAGTCATCTTGA
TCCGAATGTGCTGTACCTAGTGGATCGATTTCAAGCCATTCATTTTGATGAATTAAAGACGATTTCAGTTAAGTCTGAGA
TGAAACGAAAATTGCGTTTATTTATTGATGATATTTATGATAATTATGTCGGTCTTCGTTTGAAAAGTAAAAAATTCATT
GATGATTTAGGGACTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.55

100

0.626

Multiple sequence alignment