Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJU64_RS12010 Genome accession   NZ_CP023346
Coordinates   2273852..2274328 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC-2265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2268852..2279328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU64_RS11980 (CJU64_11980) - 2268973..2271819 (+) 2847 WP_001745291.1 Ag43/Cah family autotransporter adhesin -
  CJU64_RS11985 (CJU64_11985) - 2271890..2272085 (+) 196 Protein_2200 DUF905 family protein -
  CJU64_RS11995 (CJU64_11995) - 2272203..2273021 (+) 819 WP_001502865.1 DUF932 domain-containing protein -
  CJU64_RS12005 (CJU64_12005) - 2273363..2273836 (+) 474 WP_000855059.1 antirestriction protein -
  CJU64_RS12010 (CJU64_12010) radC 2273852..2274328 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  CJU64_RS12015 (CJU64_12015) - 2274391..2274612 (+) 222 WP_000692341.1 DUF987 domain-containing protein -
  CJU64_RS12025 (CJU64_12025) - 2274801..2276414 (-) 1614 WP_001744949.1 IS66-like element ISEc47 family transposase -
  CJU64_RS12030 (CJU64_12030) tnpB 2276445..2276795 (-) 351 WP_000624688.1 IS66 family insertion sequence element accessory protein TnpB -
  CJU64_RS12035 (CJU64_12035) - 2276792..2277226 (-) 435 WP_001403014.1 transposase -
  CJU64_RS12040 (CJU64_12040) - 2277324..2277692 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CJU64_RS12045 (CJU64_12045) - 2277782..2278156 (+) 375 WP_000854762.1 TA system toxin CbtA family protein -
  CJU64_RS12050 (CJU64_12050) - 2278153..2278305 (+) 153 Protein_2210 DUF5983 family protein -
  CJU64_RS28390 - 2278405..2278485 (+) 81 Protein_2211 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=205972 CJU64_RS12010 WP_001186774.1 2273852..2274328(+) (radC) [Escherichia coli strain ETEC-2265]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205972 CJU64_RS12010 WP_001186774.1 2273852..2274328(+) (radC) [Escherichia coli strain ETEC-2265]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment