Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BMJ37_RS01915 Genome accession   NZ_CP018133
Coordinates   365184..365621 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain ATR2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 360184..370621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ37_RS01890 (BMJ37_01855) - 361204..362340 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  BMJ37_RS01895 (BMJ37_01860) - 362355..362789 (+) 435 WP_014416871.1 RDD family protein -
  BMJ37_RS01900 (BMJ37_01865) - 362906..363184 (+) 279 WP_263612330.1 YckD family protein -
  BMJ37_RS01905 (BMJ37_01870) - 363288..364724 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  BMJ37_RS01910 (BMJ37_01875) nin/comJ 364765..365163 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  BMJ37_RS01915 (BMJ37_01880) nucA/comI 365184..365621 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BMJ37_RS01920 (BMJ37_01885) hxlB 365952..366509 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  BMJ37_RS01925 (BMJ37_01890) hxlA 366506..367141 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BMJ37_RS01930 (BMJ37_01895) - 367373..367735 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=205951 BMJ37_RS01915 WP_003156588.1 365184..365621(-) (nucA/comI) [Bacillus velezensis strain ATR2]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=205951 BMJ37_RS01915 WP_003156588.1 365184..365621(-) (nucA/comI) [Bacillus velezensis strain ATR2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment