Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BMJ37_RS00500 Genome accession   NZ_CP018133
Coordinates   93221..93511 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain ATR2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 88221..98511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ37_RS00460 (BMJ37_00450) darA 88239..88568 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  BMJ37_RS00465 (BMJ37_00455) - 88581..89021 (+) 441 WP_017419499.1 YaaR family protein -
  BMJ37_RS00470 (BMJ37_00460) holB 89033..90022 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  BMJ37_RS00475 (BMJ37_00465) ricT 90025..90852 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BMJ37_RS00480 (BMJ37_00470) yabA 90867..91226 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  BMJ37_RS00485 (BMJ37_00475) - 91287..92030 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BMJ37_RS00490 (BMJ37_00480) - 92017..92316 (+) 300 WP_099721929.1 GIY-YIG nuclease family protein -
  BMJ37_RS00495 (BMJ37_00485) rsmI 92291..93172 (+) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BMJ37_RS00500 (BMJ37_00490) abrB 93221..93511 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BMJ37_RS00505 (BMJ37_00495) metG 93994..95985 (+) 1992 WP_029974660.1 methionine--tRNA ligase -
  BMJ37_RS00510 (BMJ37_00500) - 96062..96829 (+) 768 WP_021494159.1 TatD family hydrolase -
  BMJ37_RS00515 (BMJ37_00505) - 96964..98289 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=205946 BMJ37_RS00500 WP_169510469.1 93221..93511(-) (abrB) [Bacillus velezensis strain ATR2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=205946 BMJ37_RS00500 WP_169510469.1 93221..93511(-) (abrB) [Bacillus velezensis strain ATR2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment