Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BMJ37_RS00290 Genome accession   NZ_CP018133
Coordinates   50937..52049 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain ATR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45937..57049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ37_RS00265 (BMJ37_00260) rnpA 46649..46999 (-) 351 WP_004392944.1 ribonuclease P protein component -
  BMJ37_RS00270 rpmH 47153..47287 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BMJ37_RS00275 (BMJ37_00265) dnaA 47910..49250 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  BMJ37_RS00280 (BMJ37_00270) dnaN 49435..50571 (+) 1137 WP_029973052.1 DNA polymerase III subunit beta -
  BMJ37_RS00285 (BMJ37_00275) rlbA 50706..50921 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  BMJ37_RS00290 (BMJ37_00280) recF 50937..52049 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  BMJ37_RS00295 (BMJ37_00285) remB 52067..52312 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  BMJ37_RS00300 (BMJ37_00290) gyrB 52369..54285 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BMJ37_RS00305 (BMJ37_00295) gyrA 54501..56960 (+) 2460 WP_014416706.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=205944 BMJ37_RS00290 WP_007409910.1 50937..52049(+) (recF) [Bacillus velezensis strain ATR2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=205944 BMJ37_RS00290 WP_007409910.1 50937..52049(+) (recF) [Bacillus velezensis strain ATR2]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment