Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   B8B76_RS09975 Genome accession   NZ_CP023316
Coordinates   2108358..2108687 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PPF-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103358..2113687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B8B76_RS09960 (B8B76_09935) - 2104087..2104992 (+) 906 WP_058011966.1 NAD-dependent epimerase/dehydratase family protein -
  B8B76_RS09965 (B8B76_09940) - 2105132..2106157 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  B8B76_RS09970 (B8B76_09945) - 2106170..2108167 (+) 1998 WP_058011965.1 polysaccharide biosynthesis protein -
  B8B76_RS09975 (B8B76_09950) comEA/comE1 2108358..2108687 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  B8B76_RS09985 (B8B76_09960) - 2108904..2110100 (-) 1197 WP_021265046.1 amino acid aminotransferase -
  B8B76_RS09990 (B8B76_09965) uvrB 2110288..2112300 (+) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=205869 B8B76_RS09975 WP_003091430.1 2108358..2108687(+) (comEA/comE1) [Pseudomonas aeruginosa strain PPF-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=205869 B8B76_RS09975 WP_003091430.1 2108358..2108687(+) (comEA/comE1) [Pseudomonas aeruginosa strain PPF-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment