Detailed information NTG0205865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B8B76_RS07295
• Genome accession: NZ_CP023316
• Coordinates: 1558154..1559158 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PPF-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1553154..1564158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B8B76_RS07265 (B8B76_07250)	fghA	1553246..1554097 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
B8B76_RS07270 (B8B76_07255)	ispF	1554168..1554641 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B8B76_RS07275 (B8B76_07260)	truD	1554638..1555705 (+)	1068	WP_023100864.1	tRNA pseudouridine(13) synthase TruD	-
B8B76_RS07280 (B8B76_07265)	surE	1555693..1556442 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
B8B76_RS07285 (B8B76_07270)	-	1556475..1557110 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
B8B76_RS07290 (B8B76_07275)	-	1557156..1558049 (+)	894	WP_021265159.1	peptidoglycan DD-metalloendopeptidase family protein	-
B8B76_RS07295 (B8B76_07280)	rpoS	1558154..1559158 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
B8B76_RS07300 (B8B76_07285)	fdxA	1559585..1559908 (-)	324	WP_003092272.1	ferredoxin FdxA	-
B8B76_RS07305 (B8B76_07290)	mutS	1559975..1562542 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
B8B76_RS07315 (B8B76_07300)	-	1562668..1563675 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=205865 B8B76_RS07295 WP_003113871.1 1558154..1559158(+) (rpoS) [Pseudomonas aeruginosa strain PPF-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=205865 B8B76_RS07295 WP_003113871.1 1558154..1559158(+) (rpoS) [Pseudomonas aeruginosa strain PPF-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653