Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CLD04_RS20780 Genome accession   NZ_CP023257
Coordinates   3937137..3937826 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain TLO3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3932137..3942826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS20760 (CLD04_20760) yxeA 3933042..3933389 (-) 348 WP_003227084.1 YxeA family protein -
  CLD04_RS20765 (CLD04_20765) yxdM 3933403..3935271 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  CLD04_RS20770 (CLD04_20770) yxdL 3935246..3936019 (-) 774 WP_017696087.1 ABC transporter ATP-binding protein YxdL -
  CLD04_RS20775 (CLD04_20775) yxdK 3936163..3937140 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  CLD04_RS20780 (CLD04_20780) braR 3937137..3937826 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  CLD04_RS20785 (CLD04_20785) iolJ 3937934..3938806 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  CLD04_RS20790 (CLD04_20790) iolI 3938827..3939663 (-) 837 WP_041054239.1 2-keto-myo-inositol isomerase -
  CLD04_RS20795 (CLD04_20795) iolH 3939749..3940618 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  CLD04_RS20800 (CLD04_20800) iolG 3940638..3941672 (-) 1035 WP_017696085.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=205838 CLD04_RS20780 WP_003243527.1 3937137..3937826(-) (braR) [Bacillus subtilis strain TLO3]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=205838 CLD04_RS20780 WP_003243527.1 3937137..3937826(-) (braR) [Bacillus subtilis strain TLO3]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGTTATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406