Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CLD04_RS19110 Genome accession   NZ_CP023257
Coordinates   3618648..3619781 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain TLO3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613648..3624781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS19085 (CLD04_19085) urtC 3614276..3615346 (-) 1071 WP_017696019.1 urea ABC transporter permease subunit UrtC -
  CLD04_RS19090 (CLD04_19090) urtB 3615358..3616260 (-) 903 WP_041337856.1 urea ABC transporter permease subunit UrtB -
  CLD04_RS19095 (CLD04_19095) urtA 3616293..3617549 (-) 1257 WP_041337855.1 urea ABC transporter substrate-binding protein -
  CLD04_RS19100 (CLD04_19100) - 3617752..3617940 (-) 189 WP_064816029.1 CsbD family protein -
  CLD04_RS19105 (CLD04_19105) - 3618013..3618492 (-) 480 WP_014478240.1 hypothetical protein -
  CLD04_RS19110 (CLD04_19110) rapC 3618648..3619781 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  CLD04_RS19120 (CLD04_19120) moaA 3619973..3620998 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  CLD04_RS19125 (CLD04_19125) fdhD 3621014..3621802 (-) 789 WP_047183330.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  CLD04_RS19130 (CLD04_19130) - 3622035..3622196 (-) 162 WP_003227706.1 hypothetical protein -
  CLD04_RS19135 (CLD04_19135) ywmD 3622291..3622965 (-) 675 WP_041334709.1 VWA domain-containing protein -
  CLD04_RS21740 - 3623018..3623158 (-) 141 WP_014481180.1 hypothetical protein -
  CLD04_RS19145 (CLD04_19145) ywmC 3623289..3623972 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=205832 CLD04_RS19110 WP_003227715.1 3618648..3619781(-) (rapC) [Bacillus subtilis strain TLO3]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=205832 CLD04_RS19110 WP_003227715.1 3618648..3619781(-) (rapC) [Bacillus subtilis strain TLO3]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment