Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CLD04_RS18045 Genome accession   NZ_CP023257
Coordinates   3402064..3402777 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis strain TLO3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3397064..3407777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS18025 (CLD04_18025) ghrB 3397208..3398185 (+) 978 WP_072557265.1 D-glycerate dehydrogenase -
  CLD04_RS18030 (CLD04_18030) psdB 3398223..3400163 (-) 1941 WP_029725972.1 lantibiotic ABC transporter permease PsdB -
  CLD04_RS18035 (CLD04_18035) psdA 3400138..3400917 (-) 780 WP_041338869.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  CLD04_RS18040 (CLD04_18040) psdS 3401000..3402070 (-) 1071 WP_095843968.1 two-component sensor histidine kinase PsdS -
  CLD04_RS18045 (CLD04_18045) braR 3402064..3402777 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  CLD04_RS18050 (CLD04_18050) - 3402924..3403132 (+) 209 Protein_3511 hypothetical protein -
  CLD04_RS18055 (CLD04_18055) yvcN 3403168..3403932 (-) 765 WP_080316928.1 arylamine N-acetyltransferase -
  CLD04_RS18060 (CLD04_18060) crh 3403933..3404190 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  CLD04_RS18065 (CLD04_18065) whiA 3404214..3405164 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  CLD04_RS18070 (CLD04_18070) mgfK 3405187..3406140 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  CLD04_RS18075 (CLD04_18075) rapZ 3406142..3407029 (-) 888 WP_003243903.1 RNase adapter RapZ -
  CLD04_RS18080 (CLD04_18080) rppI 3407054..3407530 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=205824 CLD04_RS18045 WP_003244535.1 3402064..3402777(-) (braR) [Bacillus subtilis strain TLO3]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=205824 CLD04_RS18045 WP_003244535.1 3402064..3402777(-) (braR) [Bacillus subtilis strain TLO3]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43