Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BO996_RS01420 Genome accession   NZ_CP018101
Coordinates   301012..302397 (-) Length   461 a.a.
NCBI ID   WP_071953819.1    Uniprot ID   -
Organism   Delftia sp. HK171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296012..307397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BO996_RS01395 (BO996_01375) - 296822..298033 (-) 1212 WP_232240449.1 O-antigen ligase family protein -
  BO996_RS01400 (BO996_01380) - 298222..299088 (+) 867 WP_071953817.1 capsular polysaccharide synthesis protein -
  BO996_RS01405 (BO996_01385) - 299120..299329 (-) 210 WP_012202256.1 zinc-finger domain-containing protein -
  BO996_RS01410 (BO996_01390) - 299364..300302 (-) 939 WP_034397818.1 branched-chain amino acid transaminase -
  BO996_RS01415 (BO996_01395) - 300347..300784 (-) 438 WP_012202254.1 hypothetical protein -
  BO996_RS01420 (BO996_01400) radA 301012..302397 (-) 1386 WP_071953819.1 DNA repair protein RadA Machinery gene
  BO996_RS01430 (BO996_01410) - 302685..303497 (-) 813 WP_043821913.1 siderophore-interacting protein -
  BO996_RS01435 (BO996_01415) - 303594..304034 (+) 441 WP_012202251.1 MarR family transcriptional regulator -
  BO996_RS01440 (BO996_01420) alr 304035..305138 (-) 1104 WP_071953821.1 alanine racemase -
  BO996_RS01445 (BO996_01425) lplT 305273..306574 (+) 1302 WP_013800185.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48150.72 Da        Isoelectric Point: 7.6673

>NTDB_id=205797 BO996_RS01420 WP_071953819.1 301012..302397(-) (radA) [Delftia sp. HK171]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGIG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=205797 BO996_RS01420 WP_071953819.1 301012..302397(-) (radA) [Delftia sp. HK171]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAACTCGCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTCGGCCTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTATTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACG
GTGCTGTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAC
CAGGGTGGCCCCGCGCCTCGGCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGTGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCACCATGGC
CGTGGTACCCAAGGCCAATGCGCCCAAGAAGGCCATCCCGGGTCTGACCGTGCATGCCGTGGAACGCGTGGACGAGGCCA
TGAATATCGTGAGAGGAATAGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

98.915

0.484
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46

Multiple sequence alignment