Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CLD04_RS10300 Genome accession   NZ_CP023257
Coordinates   1946970..1947587 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain TLO3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1941970..1952587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS10270 (CLD04_10270) yndJ 1942287..1943927 (+) 1641 WP_017697359.1 YndJ family protein -
  CLD04_RS10275 (CLD04_10275) - 1944017..1944331 (+) 315 WP_026113726.1 hypothetical protein -
  CLD04_RS10280 (CLD04_10280) pghL 1944556..1945314 (+) 759 WP_017697358.1 gamma-polyglutamate hydrolase PghL -
  CLD04_RS10285 (CLD04_10285) - 1945341..1945790 (-) 450 WP_017697357.1 YndM family protein -
  CLD04_RS10290 (CLD04_10290) fosM 1945998..1946432 (+) 435 WP_017697356.1 FosM family fosfomycin resistance protein -
  CLD04_RS22085 - 1946341..1946617 (+) 277 Protein_1984 hypothetical protein -
  CLD04_RS10300 (CLD04_10300) dinR/lexA 1946970..1947587 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  CLD04_RS10305 (CLD04_10305) yneA 1947737..1948054 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  CLD04_RS10310 (CLD04_10310) dinL 1948073..1948726 (+) 654 WP_015714011.1 recombinase family protein -
  CLD04_RS10315 (CLD04_10315) ynzC 1948790..1949023 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  CLD04_RS10320 (CLD04_10320) recP/tkt 1949192..1951195 (+) 2004 WP_003231593.1 transketolase Machinery gene
  CLD04_RS10325 (CLD04_10325) sirA 1951348..1951794 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  CLD04_RS10330 (CLD04_10330) yneF 1951880..1952098 (+) 219 WP_003221221.1 YneF family protein -
  CLD04_RS10335 (CLD04_10335) ynzD 1952172..1952345 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=205773 CLD04_RS10300 WP_003238209.1 1946970..1947587(-) (dinR/lexA) [Bacillus subtilis strain TLO3]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=205773 CLD04_RS10300 WP_003238209.1 1946970..1947587(-) (dinR/lexA) [Bacillus subtilis strain TLO3]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCAGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACTGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment