Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BRL64_RS11690 | Genome accession | NZ_CP018100 |
| Coordinates | 2256492..2256827 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain BRM1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2251492..2261827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BRL64_RS11670 (BRL64_11470) | gcvT | 2251969..2253066 (-) | 1098 | WP_081124567.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BRL64_RS11675 (BRL64_11475) | - | 2253628..2255298 (+) | 1671 | WP_081124568.1 | DEAD/DEAH box helicase | - |
| BRL64_RS11680 (BRL64_11480) | - | 2255313..2256110 (+) | 798 | WP_034280228.1 | YqhG family protein | - |
| BRL64_RS11685 | - | 2256294..2256458 (+) | 165 | WP_075623492.1 | anti-repressor SinI family protein | - |
| BRL64_RS11690 (BRL64_11485) | sinR | 2256492..2256827 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| BRL64_RS11695 (BRL64_11490) | tasA | 2256895..2257695 (-) | 801 | WP_034280222.1 | biofilm matrix protein TasA | - |
| BRL64_RS11700 (BRL64_11495) | sipW | 2257753..2258325 (-) | 573 | WP_034280218.1 | signal peptidase I SipW | - |
| BRL64_RS11705 (BRL64_11500) | tapA | 2258378..2258905 (-) | 528 | WP_081124569.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BRL64_RS11710 (BRL64_11505) | - | 2259205..2259483 (+) | 279 | WP_061109527.1 | DUF3889 domain-containing protein | - |
| BRL64_RS11715 (BRL64_11510) | - | 2259518..2259712 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| BRL64_RS11720 (BRL64_11515) | - | 2259772..2260155 (-) | 384 | WP_081124570.1 | competence type IV pilus minor pilin ComGG | - |
| BRL64_RS11725 (BRL64_11520) | comGF | 2260152..2260679 (-) | 528 | WP_257788741.1 | competence type IV pilus minor pilin ComGF | - |
| BRL64_RS19875 (BRL64_11525) | comGE | 2260591..2260905 (-) | 315 | WP_041106865.1 | competence type IV pilus minor pilin ComGE | - |
| BRL64_RS11735 (BRL64_11530) | comGD | 2260889..2261335 (-) | 447 | WP_081124572.1 | competence type IV pilus minor pilin ComGD | - |
| BRL64_RS11740 (BRL64_11535) | comGC | 2261328..2261621 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=205769 BRL64_RS11690 WP_024422969.1 2256492..2256827(+) (sinR) [Bacillus safensis strain BRM1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=205769 BRL64_RS11690 WP_024422969.1 2256492..2256827(+) (sinR) [Bacillus safensis strain BRM1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |