Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BRL64_RS07265 Genome accession   NZ_CP018100
Coordinates   1399581..1399859 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain BRM1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394581..1404859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL64_RS07245 (BRL64_07120) - 1394678..1394953 (-) 276 WP_034281618.1 hypothetical protein -
  BRL64_RS07250 (BRL64_07125) - 1395097..1396716 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  BRL64_RS07255 (BRL64_07130) - 1396752..1397984 (-) 1233 WP_081124339.1 aminopeptidase -
  BRL64_RS19575 - 1398092..1398223 (-) 132 WP_003210922.1 protein YkpC -
  BRL64_RS07260 (BRL64_07135) mreBH 1398298..1399305 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  BRL64_RS07265 (BRL64_07140) abrB 1399581..1399859 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BRL64_RS07270 (BRL64_07145) - 1400005..1401315 (+) 1311 WP_046310821.1 ATP-binding protein -
  BRL64_RS07275 (BRL64_07150) - 1401320..1402156 (+) 837 WP_081124340.1 gamma-glutamylcyclotransferase -
  BRL64_RS07280 (BRL64_07155) - 1402194..1402862 (+) 669 WP_008345123.1 potassium channel family protein -
  BRL64_RS07285 (BRL64_07160) ade 1403125..1404855 (+) 1731 WP_081124341.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=205760 BRL64_RS07265 WP_024424746.1 1399581..1399859(+) (abrB) [Bacillus safensis strain BRM1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=205760 BRL64_RS07265 WP_024424746.1 1399581..1399859(+) (abrB) [Bacillus safensis strain BRM1]
TTGAAATCTATTGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment