Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CLD04_RS08350 Genome accession   NZ_CP023257
Coordinates   1556361..1556936 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain TLO3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551361..1561936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS08325 (CLD04_08325) ykuS 1552249..1552494 (+) 246 WP_003232382.1 YkuS family protein -
  CLD04_RS08330 (CLD04_08330) - 1552608..1553759 (+) 1152 Protein_1589 IS3 family transposase -
  CLD04_RS08335 (CLD04_08335) mscT 1553821..1554624 (-) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  CLD04_RS08340 (CLD04_08340) ahpA 1554861..1555403 (+) 543 WP_017697282.1 biofilm-specific peroxidase AhpA -
  CLD04_RS08345 (CLD04_08345) ykuV 1555475..1555921 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  CLD04_RS08350 (CLD04_08350) rok 1556361..1556936 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  CLD04_RS08355 (CLD04_08355) - 1557057..1558208 (+) 1152 Protein_1594 IS3 family transposase -
  CLD04_RS08360 (CLD04_08360) cse15 1558268..1559233 (-) 966 WP_014479669.1 spore protein Cse15 -
  CLD04_RS08365 (CLD04_08365) mobA 1559370..1559969 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  CLD04_RS08370 (CLD04_08370) moeB 1560020..1561039 (+) 1020 WP_017696813.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=205756 CLD04_RS08350 WP_003232378.1 1556361..1556936(+) (rok) [Bacillus subtilis strain TLO3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=205756 CLD04_RS08350 WP_003232378.1 1556361..1556936(+) (rok) [Bacillus subtilis strain TLO3]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1