Detailed information NTG0205709

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CLD04_RS02060
• Genome accession: NZ_CP023257
• Coordinates: 359323..360444 (+)
• Length: 373 a.a.
• NCBI ID: WP_069837225.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TLO3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 354323..365444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLD04_RS02040 (CLD04_02040)	ycdA	354331..355395 (-)	1065	WP_041352224.1	DUF4352 domain-containing protein	-
CLD04_RS21535	-	355418..355549 (-)	132	WP_003246334.1	hypothetical protein	-
CLD04_RS02045 (CLD04_02045)	ycdB	355723..357141 (+)	1419	WP_095843456.1	YcdB/YcdC domain-containing protein	-
CLD04_RS02050 (CLD04_02050)	ycdC	357328..358689 (+)	1362	WP_095844124.1	YcdB/YcdC domain-containing protein	-
CLD04_RS02055 (CLD04_02055)	cwlK	358697..359200 (-)	504	WP_017695036.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
CLD04_RS02060 (CLD04_02060)	rapF	359323..360444 (+)	1122	WP_069837225.1	response regulator aspartate phosphatase RapJ	Regulator
CLD04_RS02065 (CLD04_02065)	ycdF	360551..361327 (+)	777	WP_095843457.1	SDR family oxidoreductase	-
CLD04_RS02070 (CLD04_02070)	ycdG	361351..363036 (+)	1686	WP_095843458.1	alpha-glucosidase	-
CLD04_RS02075 (CLD04_02075)	znuA	363224..364183 (+)	960	WP_029317219.1	metal ABC transporter substrate-binding protein	-
CLD04_RS02080 (CLD04_02080)	znuC	364238..364933 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44354.20 Da
• Isoelectric Point: 4.8344

>NTDB_id=205709 CLD04_RS02060 WP_069837225.1 359323..360444(+) (rapF) [Bacillus subtilis strain TLO3]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAAEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLLNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=205709 CLD04_RS02060 WP_069837225.1 359323..360444(+) (rapF) [Bacillus subtilis strain TLO3]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAGCTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGACTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGCAGAGGCGTATGATCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAACTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGTTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGCTGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (219-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405