Detailed information NTG0205706

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CLD04_RS01320
• Genome accession: NZ_CP023257
• Coordinates: 217800..218933 (+)
• Length: 377 a.a.
• NCBI ID: WP_087961655.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TLO3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 212800..223933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLD04_RS01290 (CLD04_01290)	-	213695..213973 (+)	279	WP_017696800.1	hemolysin XhlA family protein	-
CLD04_RS01295 (CLD04_01295)	-	213989..214252 (+)	264	WP_095843439.1	phage holin	-
CLD04_RS01300 (CLD04_01300)	-	214304..215278 (+)	975	WP_095843440.1	N-acetylmuramoyl-L-alanine amidase	-
CLD04_RS01305 (CLD04_01305)	-	215316..215756 (-)	441	WP_095843441.1	SMI1/KNR4 family protein	-
CLD04_RS01310 (CLD04_01310)	-	215769..217589 (-)	1821	WP_095843442.1	T7SS effector LXG polymorphic toxin	-
CLD04_RS01320 (CLD04_01320)	rapC	217800..218933 (+)	1134	WP_087961655.1	tetratricopeptide repeat protein	Regulator
CLD04_RS21780	-	218923..219081 (+)	159	WP_164907155.1	hypothetical protein	-
CLD04_RS01325 (CLD04_01325)	-	219113..219445 (-)	333	WP_087961654.1	YolD-like family protein	-
CLD04_RS01330 (CLD04_01330)	-	219551..219778 (+)	228	WP_087961653.1	hypothetical protein	-
CLD04_RS01335 (CLD04_01335)	-	219771..219983 (+)	213	WP_087961652.1	transcriptional regulator	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44585.91 Da
• Isoelectric Point: 5.4591

>NTDB_id=205706 CLD04_RS01320 WP_087961655.1 217800..218933(+) (rapC) [Bacillus subtilis strain TLO3]
MNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTI
SELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSM
HHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQPSKA
EGYLKEAAEVAERANLRTLPHTLHSLATVLFKQEKFNEGQKVLQQGIETAQKFNDELFLSMNQFLNALYIESVDKQGILN
ILNHLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=205706 CLD04_RS01320 WP_087961655.1 217800..218933(+) (rapC) [Bacillus subtilis strain TLO3]
GTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAAGATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCC
GGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATTAAACAAATGGAAGAGGATGAGTATTTACTAATTTATTACT
CACTAATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCGGAAAAAAAGTATAGAACAGCACGTCCAACCATC
TCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAATATTACTCACTATTTTTCCGCGG
TATGTATGAATTTGATCAGCAAGAATTCGTGGAAGCTATTAACTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTA
CTGATGAAATCGAACAAGCTGAATTTCATTTTAAGGTGGCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATG
CATCACATTTTAAAGGCATTAGAGATTTATGATCAGAATCCGCTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAAT
CGTAGGTAACTATCTCGATTTTAAACATTATGAAAAAGGGTTAAAACATCTTGAAGAAGCCCTGAAGCTTTCTAAGGAAT
TAGGGCACGACAGACTAATAAGTTCTGCTTTGTATAATTTAGGTGAATGTTATCATTACATGGGACAACCAAGTAAAGCT
GAAGGATATTTGAAAGAAGCAGCTGAGGTTGCAGAAAGAGCAAATTTAAGGACACTTCCTCATACGCTCCATTCGTTGGC
CACAGTTTTATTCAAGCAGGAAAAGTTTAATGAAGGACAGAAGGTTTTACAGCAAGGGATCGAAACAGCACAAAAATTCA
ATGATGAACTTTTCCTATCGATGAATCAGTTTCTGAATGCCCTATATATTGAGTCTGTTGATAAACAGGGTATCCTCAAT
ATATTGAATCATCTTAATGAAAGTCACATGTTTTCATTTACGGAACACATAACGCTGCTAACTGCAGAATATTATAGAGA
AGGCGGAGAATTTGAAGAATCCAGTTTTTTCTATGATAAAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTT
TATATGAGTATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.467	99.469	0.432
rapF	Bacillus subtilis subsp. subtilis str. 168	40.212	100	0.403