Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CLD04_RS00335 Genome accession   NZ_CP023257
Coordinates   59828..60058 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain TLO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54828..65058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS00305 (CLD04_00305) ridA 54991..55368 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  CLD04_RS00310 (CLD04_00310) spoVG 55563..55856 (+) 294 WP_003218346.1 septation regulator SpoVG -
  CLD04_RS00315 (CLD04_00315) glmU 56049..57419 (+) 1371 WP_041351140.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CLD04_RS00320 (CLD04_00320) prsS 57442..58395 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  CLD04_RS00325 (CLD04_00325) rplYB 58481..59095 (+) 615 WP_041334223.1 50S ribosomal protein L25/general stress protein Ctc -
  CLD04_RS00330 (CLD04_00330) pth 59202..59768 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  CLD04_RS00335 (CLD04_00335) subA/fin 59828..60058 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  CLD04_RS00340 (CLD04_00340) mfd 60128..63661 (+) 3534 WP_017696373.1 transcription-repair coupling factor -
  CLD04_RS00345 (CLD04_00345) spoVT 63797..64333 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=205702 CLD04_RS00335 WP_003243417.1 59828..60058(+) (subA/fin) [Bacillus subtilis strain TLO3]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=205702 CLD04_RS00335 WP_003243417.1 59828..60058(+) (subA/fin) [Bacillus subtilis strain TLO3]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment