Detailed information NTG0205689

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CLH63_RS30435
• Genome accession: NZ_CP023255
• Coordinates: 6307501..6308505 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CCUG 70744
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6302501..6313505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLH63_RS30405 (CLH63_30415)	fghA	6302593..6303444 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CLH63_RS30410 (CLH63_30420)	ispF	6303515..6303988 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CLH63_RS30415 (CLH63_30425)	truD	6303985..6305052 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
CLH63_RS30420 (CLH63_30430)	surE	6305040..6305789 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CLH63_RS30425 (CLH63_30435)	-	6305822..6306457 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CLH63_RS30430 (CLH63_30440)	-	6306503..6307396 (+)	894	WP_110184030.1	peptidoglycan DD-metalloendopeptidase family protein	-
CLH63_RS30435 (CLH63_30445)	rpoS	6307501..6308505 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CLH63_RS30440 (CLH63_30450)	fdxA	6308932..6309255 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CLH63_RS30445 (CLH63_30455)	mutS	6309322..6311877 (-)	2556	WP_110184031.1	DNA mismatch repair protein MutS	-
CLH63_RS30455 (CLH63_30465)	-	6312003..6313010 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=205689 CLH63_RS30435 WP_003113871.1 6307501..6308505(+) (rpoS) [Pseudomonas aeruginosa strain CCUG 70744]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=205689 CLH63_RS30435 WP_003113871.1 6307501..6308505(+) (rpoS) [Pseudomonas aeruginosa strain CCUG 70744]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653