Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   Cj1076 Genome accession   NC_002163
Coordinates   1010010..1010741 (+) Length   243 a.a.
NCBI ID   YP_002344469.1    Uniprot ID   Q0P9H8
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005010..1015741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1070 rpsF 1005152..1005529 (+) 378 YP_002344463.1 30S ribosomal protein S6 -
  Cj1071 ssb 1005538..1006089 (+) 552 YP_002344464.1 single-stranded DNA-binding protein -
  Cj1072 rpsR 1006100..1006360 (+) 261 YP_002344465.1 30S ribosomal protein S18 -
  Cj1073c lon 1006421..1008796 (-) 2376 YP_002344466.1 ATP-dependent protease La -
  Cj1074c - 1008813..1009460 (-) 648 YP_002344467.1 lipoprotein -
  Cj1075 - 1009621..1010010 (+) 390 YP_002344468.1 flagellar assembly protein FliW -
  Cj1076 proC 1010010..1010741 (+) 732 YP_002344469.1 pyrroline-5-carboxylate reductase Machinery gene
  Cj1077 ctsT 1010738..1011040 (+) 303 YP_002344470.1 periplasmic protein Machinery gene
  Cj1078 - 1011037..1011699 (+) 663 YP_002344471.1 periplasmic protein -
  Cj1079 - 1011696..1012148 (+) 453 YP_002344472.1 periplasmic protein -
  Cj1080c hemD 1012145..1012774 (-) 630 YP_002344473.1 uroporphyrinogen-III synthase -
  Cj1081c thiE 1012752..1013384 (-) 633 YP_002344474.1 thiamin-phosphate pyrophosphorylase -
  Cj1082c thiD 1013374..1014186 (-) 813 YP_002344475.1 phosphomethylpyrimidine kinase -
  Cj1083c - 1014183..1014869 (-) 687 YP_002344476.1 endonuclease III -
  Cj1084c - 1014866..1015627 (-) 762 YP_002344477.1 ATP/GTP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26586.98 Da        Isoelectric Point: 8.5934

>NTDB_id=20563 Cj1076 YP_002344469.1 1010010..1010741(+) (proC) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSNALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=20563 Cj1076 YP_002344469.1 1010010..1010741(+) (proC) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAATGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P9H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.177

100

0.992

Multiple sequence alignment