Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   Cj0594c Genome accession   NC_002163
Coordinates   551878..552528 (-) Length   216 a.a.
NCBI ID   YP_002344024.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 546878..557528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj0587 - 547256..548260 (+) 1005 YP_002344017.1 integral membrane protein -
  Cj0588 tlyA 548257..549018 (+) 762 YP_002344018.1 hemolysin -
  Cj0589 ribF 548984..549838 (+) 855 YP_002344019.1 bifunctional riboflavin kinase/FMN adenylyltransferase -
  Cj0590 - 549825..550535 (+) 711 YP_002344020.1 tRNA (cmo5U34)-methyltransferase -
  Cj0591c - 550525..550746 (-) 222 YP_002344021.1 lipoprotein -
  Cj0592c - 550743..551177 (-) 435 YP_002344022.1 periplasmic protein -
  Cj0593c - 551235..551867 (-) 633 YP_002344023.1 integral membrane protein -
  Cj0594c CJE0566 551878..552528 (-) 651 YP_002344024.1 DNA/RNA non-specific endonuclease Regulator
  Cj0595c nth 552525..553151 (-) 627 YP_002344025.1 endonuclease III -
  Cj0596 peb4cbf2 553232..554053 (+) 822 YP_002344026.1 peptidyl-prolyl cis-trans isomerase -
  Cj0597 fba 554053..555117 (+) 1065 YP_002344027.1 fructose-bisphosphate aldolase -
  Cj0598 - 555212..556654 (+) 1443 YP_002344028.1 membrane protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=20561 Cj0594c YP_002344024.1 551878..552528(-) (CJE0566) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=20561 Cj0594c YP_002344024.1 551878..552528(-) (CJE0566) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment