Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DN94_04690 Genome accession   CP007565
Coordinates   904543..905505 (-) Length   320 a.a.
NCBI ID   AHX74998.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 899543..910505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_04675 - 901724..902752 (-) 1029 AHX74995.1 ferrichrome ABC transporter substrate-binding protein -
  DN94_04680 - 902814..903575 (-) 762 AHX74996.1 iron ABC transporter ATP-binding protein -
  DN94_04685 - 903572..904546 (-) 975 AHX74997.1 iron ABC transporter permease -
  DN94_04690 ceuB 904543..905505 (-) 963 AHX74998.1 iron ABC transporter permease Machinery gene
  DN94_04695 - 905744..906292 (-) 549 AHX74999.1 galactoside O-acetyltransferase -
  DN94_04700 - 906313..907074 (-) 762 AHX75000.1 ribonuclease HII -
  DN94_04705 rbgA 907061..907912 (-) 852 AHX75001.1 GTPase -
  DN94_04710 - 908188..908760 (-) 573 AHX75002.1 cell surface protein -
  DN94_04715 - 908962..910446 (-) 1485 AHX75003.1 carbon starvation protein CstA -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34893.03 Da        Isoelectric Point: 8.4842

>NTDB_id=20561 DN94_04690 AHX74998.1 904543..905505(-) (ceuB) [Streptococcus agalactiae strain 138spar]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFVILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYIALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=20561 DN94_04690 AHX74998.1 904543..905505(-) (ceuB) [Streptococcus agalactiae strain 138spar]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGTCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CATAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.962

99.688

0.478

Multiple sequence alignment