Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   YA91_RS22610 Genome accession   NZ_CP023248
Coordinates   3083855..3084328 (+) Length   157 a.a.
NCBI ID   WP_005496804.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3078855..3089328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS22595 (YA91_24095) - 3079446..3080672 (+) 1227 WP_005496807.1 site-specific integrase -
  YA91_RS22600 (YA91_24100) - 3080776..3082389 (-) 1614 WP_005496806.1 TIGR02391 family protein -
  YA91_RS22605 (YA91_24105) - 3082485..3083663 (-) 1179 WP_005496805.1 DNA cytosine methyltransferase -
  YA91_RS22610 (YA91_24110) radC 3083855..3084328 (+) 474 WP_005496804.1 DNA repair protein RadC Machinery gene
  YA91_RS22615 (YA91_24115) - 3084325..3084762 (+) 438 WP_005496803.1 DUF2787 domain-containing protein -
  YA91_RS22620 (YA91_24120) - 3084814..3085257 (+) 444 WP_005496802.1 DUF2787 domain-containing protein -
  YA91_RS22625 (YA91_24125) - 3085261..3085437 (+) 177 WP_004724457.1 hypothetical protein -
  YA91_RS22630 (YA91_24130) - 3085576..3086310 (+) 735 WP_005496801.1 WYL domain-containing protein -
  YA91_RS22635 (YA91_24135) - 3086341..3086709 (+) 369 WP_005496797.1 hypothetical protein -
  YA91_RS22640 (YA91_24140) - 3086757..3086984 (+) 228 WP_005496795.1 hypothetical protein -
  YA91_RS22645 (YA91_24150) - 3087341..3089092 (-) 1752 WP_005496793.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17734.98 Da        Isoelectric Point: 5.2897

>NTDB_id=205583 YA91_RS22610 WP_005496804.1 3083855..3084328(+) (radC) [Vibrio parahaemolyticus strain MAVP-26]
MNPKTSDYQKQQRYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGGYEREVFALLLLDNQNRLIEFKELFQGT
LDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=205583 YA91_RS22610 WP_005496804.1 3083855..3084328(+) (radC) [Vibrio parahaemolyticus strain MAVP-26]
ATGAATCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
GGCTACACGCTACGTGCGTGGTGACGCCCTAACCAACCCTGATGCCACCAAAGAGTATGTACGCTGTAAGCTAGGCGGCT
ATGAGCGTGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGCACG
TTGGATGCGGCCAGCGTCTACCCACGTGAAGTGGTGAAAGCTGTGTTGGAAGTCAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCCGGTGACTCAACACCGTCTCAAGCCGATAGACGCATAACAGAAAGACTCAAAGATGCATTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCGTTTGCGGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

87.261

0.401

Multiple sequence alignment