Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   YA91_RS19360 Genome accession   NZ_CP023248
Coordinates   2400531..2403902 (-) Length   1123 a.a.
NCBI ID   WP_005496068.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2395531..2408902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS19340 (YA91_20605) - 2396374..2396802 (+) 429 WP_005496061.1 HIT domain-containing protein -
  YA91_RS19345 (YA91_20610) - 2396920..2397150 (-) 231 WP_005496063.1 FeoC-like transcriptional regulator -
  YA91_RS19350 (YA91_20615) feoB 2397147..2399423 (-) 2277 WP_005496064.1 Fe(2+) transporter permease subunit FeoB -
  YA91_RS19355 (YA91_20620) - 2399423..2399650 (-) 228 WP_005455496.1 FeoA family protein -
  YA91_RS19360 (YA91_20630) tfoS 2400531..2403902 (-) 3372 WP_005496068.1 AraC family transcriptional regulator Regulator
  YA91_RS19365 (YA91_20635) znuA 2404113..2404991 (-) 879 WP_005496070.1 zinc ABC transporter substrate-binding protein ZnuA -
  YA91_RS19370 (YA91_20640) znuC 2405070..2405858 (+) 789 WP_005486019.1 zinc ABC transporter ATP-binding protein ZnuC -
  YA91_RS19375 (YA91_20645) znuB 2405851..2406636 (+) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  YA91_RS19380 (YA91_20650) sucD 2406774..2407646 (-) 873 WP_005496073.1 succinate--CoA ligase subunit alpha -
  YA91_RS19385 (YA91_20655) sucC 2407646..2408812 (-) 1167 WP_005496074.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126839.36 Da        Isoelectric Point: 5.5776

>NTDB_id=205572 YA91_RS19360 WP_005496068.1 2400531..2403902(-) (tfoS) [Vibrio parahaemolyticus strain MAVP-26]
MLRQLVLIFWGLFISSQAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLPGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQFAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPMERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIAEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDS
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=205572 YA91_RS19360 WP_005496068.1 2400531..2403902(-) (tfoS) [Vibrio parahaemolyticus strain MAVP-26]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCAAGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACCGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTAA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACTAATCAAGAGTATTGGGTTGGTACTGAACACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAACTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAAA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGTTTGGAGATATTCCAATTGGAGGGGCTG
AAAAAGGTTAGCTTCCCTTATTTACAAGTAATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCTTATATGATACCGAAGATAAACTTTTTATTGGTACGGATCACGGCATT
TATGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGCGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTCGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGCCCGGTGAGTTAGTTAAACATTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGTGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTTTACTACCGCTTAAACGAAGACGACCGATGGCAGACTTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGTTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAATGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTAAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTCGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGATGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGTTAGAAGAGGGGCGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCTAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTCGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGCCGAAGAAAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTTTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAATTGCGGTTTCA
ATGATCCCTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.448

100

0.393

Multiple sequence alignment