Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EM4838_RS13530 Genome accession   NZ_CP018061
Coordinates   2902151..2903521 (-) Length   456 a.a.
NCBI ID   WP_019723034.1    Uniprot ID   A0A1L8V0P3
Organism   Enterococcus mundtii strain DSM 4838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2897151..2908521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM4838_RS13515 (EM4838_13280) epsC 2898330..2898878 (-) 549 WP_010734062.1 serine O-acetyltransferase EpsC -
  EM4838_RS13520 (EM4838_13285) gltX 2899190..2900650 (-) 1461 WP_010734061.1 glutamate--tRNA ligase -
  EM4838_RS13525 (EM4838_13290) - 2900976..2902124 (-) 1149 WP_019723035.1 PIN/TRAM domain-containing protein -
  EM4838_RS13530 (EM4838_13295) radA 2902151..2903521 (-) 1371 WP_019723034.1 DNA repair protein RadA Machinery gene
  EM4838_RS13535 (EM4838_13300) - 2903587..2904114 (-) 528 WP_010734058.1 dUTP diphosphatase -
  EM4838_RS13540 (EM4838_13305) proB 2904329..2905132 (+) 804 WP_071866524.1 glutamate 5-kinase -
  EM4838_RS13545 (EM4838_13310) - 2905132..2906379 (+) 1248 WP_071866523.1 glutamate-5-semialdehyde dehydrogenase -
  EM4838_RS13550 (EM4838_13315) - 2906555..2906863 (-) 309 WP_071866561.1 hypothetical protein -
  EM4838_RS13555 (EM4838_13320) - 2906948..2907388 (-) 441 WP_071866522.1 DUF2798 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49898.54 Da        Isoelectric Point: 7.0288

>NTDB_id=205549 EM4838_RS13530 WP_019723034.1 2902151..2903521(-) (radA) [Enterococcus mundtii strain DSM 4838]
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRVRTSLTGEKAKPTKIAEVVPKKEPRVKTKLEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESADQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHAHGLEEVANPSQIFLEERLDGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVNQIEQRVKEVQKLGFTKVYLPKNNLGGWNIPEGIEVVGVATLDETLRRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=205549 EM4838_RS13530 WP_019723034.1 2902151..2903521(-) (radA) [Enterococcus mundtii strain DSM 4838]
ATGGCCAAAAAAGCAAAAGTTCAATTTGTTTGTCAAAATTGTGGCTATGTGTCGCCTAAATTTTTAGGACGTTGCCCAAA
TTGTGGCAAATGGAATACCATGGTTGAAGAAATCGAACAAGATACAACGGACCGCAGAGTACGAACGAGTTTGACCGGAG
AAAAAGCCAAGCCAACAAAAATCGCTGAGGTGGTTCCTAAGAAAGAACCACGAGTAAAGACGAAGCTAGAAGAATTGAAC
CGTGTTTTAGGCGGTGGTGTGGTTCCTGGCTCGATGGTTTTGATCGGTGGCGATCCTGGTATCGGAAAATCCACCCTACT
CTTGCAAGTATCACAGCAACTGGCTGCTATTGGTGGAAAAGTCCTTTACGTATCGGGAGAAGAGAGTGCGGACCAAATCA
AGTTGCGTGCAGAACGATTAGGTTCGATCGACACAGAGTTTTACTTGTATGCAGAGACAGATATGAATGAAATCAGTCGA
GCCATCGAACAAATTTCACCTGATTATGTCATTATCGATTCGATCCAAACAATGACTCAACCTGATATTACGAGTGTCGC
TGGTAGTGTTAGTCAAGTGCGAGAAACCACAGCTGAGCTATTGAAAATCGCAAAAACAAACGGTATTGCCATATTTATAG
TAGGTCATGTCACGAAAGAAGGCTCGATTGCAGGTCCGCGCATGTTAGAGCACATGGTTGATACGGTCTTGTATTTTGAA
GGTGAGCAACATCATAGTTTTCGTATTTTACGTGCCGTCAAAAATCGGTTTGGTTCCACCAATGAGATCGGTATTTTTGA
GATGCACGCCCATGGGCTTGAAGAAGTAGCGAATCCTTCACAGATTTTCTTAGAAGAACGATTGGATGGAGCGACAGGTT
CAGCGATCGTTGTCGCCATGGAAGGAACACGCCCGATCTTAGTAGAGATCCAAGCTTTAGTCACACCCACGATGTTCGGA
AATGCCAAACGAACAACGACTGGTTTAGACTTTAATCGGGTGTCATTGATCATGGCAGTCTTAGAAAAACGGGCAGGATT
ATTGTTGCAAAATCAAGATGCTTACTTAAAAGCAGCTGGTGGGGTAAAATTAAATGAACCTGCGATCGATTTAGCAATTG
CAGTCAGTATTGCGTCTAGTTACAAAGAAAAAGGAACACAACCAACGGAGTGTTTTATTGGAGAAATCGGTCTGACTGGT
GAAATCAGAAGAGTCAACCAAATTGAACAACGAGTAAAAGAAGTACAAAAATTAGGTTTTACAAAAGTATATTTACCTAA
AAATAATTTAGGTGGTTGGAATATTCCAGAGGGTATCGAAGTCGTAGGTGTTGCTACACTTGATGAAACTCTTAGACGAG
TATTTCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L8V0P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

74.945

99.781

0.748
  radA Streptococcus pneumoniae D39

74.945

99.781

0.748
  radA Streptococcus pneumoniae R6

74.945

99.781

0.748
  radA Streptococcus pneumoniae TIGR4

74.945

99.781

0.748
  radA Streptococcus mitis NCTC 12261

74.945

99.781

0.748
  radA Streptococcus mitis SK321

74.945

99.781

0.748
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664

Multiple sequence alignment