Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EM4838_RS12395 Genome accession   NZ_CP018061
Coordinates   2644181..2645992 (-) Length   603 a.a.
NCBI ID   WP_071866479.1    Uniprot ID   -
Organism   Enterococcus mundtii strain DSM 4838     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2639181..2650992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM4838_RS12385 (EM4838_12175) abc-f 2639398..2640870 (-) 1473 WP_071866477.1 ribosomal protection-like ABC-F family protein -
  EM4838_RS12390 (EM4838_12180) - 2641247..2642275 (-) 1029 WP_071866478.1 zinc-dependent alcohol dehydrogenase family protein -
  EM4838_RS12395 (EM4838_12185) pepF 2644181..2645992 (-) 1812 WP_071866479.1 oligoendopeptidase F Regulator
  EM4838_RS12400 (EM4838_12190) - 2646124..2647119 (-) 996 WP_071866480.1 competence protein CoiA -
  EM4838_RS12405 (EM4838_12195) - 2647239..2647889 (-) 651 WP_071866481.1 adaptor protein MecA -
  EM4838_RS12410 (EM4838_12200) spxA 2648051..2648449 (-) 399 WP_019723016.1 transcriptional regulator SpxA -
  EM4838_RS12415 (EM4838_12205) - 2649203..2649925 (+) 723 WP_071866482.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69024.26 Da        Isoelectric Point: 4.7095

>NTDB_id=205540 EM4838_RS12395 WP_071866479.1 2644181..2645992(-) (pepF) [Enterococcus mundtii strain DSM 4838]
MSETTKLPNREDLPEKLTWDLTPIFSSDQEFDKKYEELTEELKNSEHYKGTLGNGATAFLEALEFVLTMYRKVELIYVYS
HLKNDQDTTNTTYQALYARAGSLLSKVSEAIAWYEPEVLQLSDEQIWQYFEEEPKLEVYRHYVKQMVDNRSHILSADQEA
LLAGAGEIFGASSGTFAVLNNADLEFPTITGENGEKIQLSHGVYGQLLESTNREVREAAFKGLYSVYAQFRNTFASTLGT
HIKGHNFKAKARQYASAREAALSNNHIPESVYDTLVTVVNKHLPLLHRYMELRKRLLNVDTLHMYDLYTPVLGEAPIKFT
YEEAVEKAIESLAPMGEEYLAVVKEAFSNRWIDVVENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEHLLATEEDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHQEDAKGT
PLTSEYLSESYGELNAKYYGPAVEKDPEIKDEWARIPHFYYNYYVYQYSTGFSAASALAKKIWEKEPGALDAYLTYLKAG
NSDYPVEVMKKAGVDMTQAAYIEDAMAVFEQRLNELEALVEEL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=205540 EM4838_RS12395 WP_071866479.1 2644181..2645992(-) (pepF) [Enterococcus mundtii strain DSM 4838]
ATGAGCGAAACAACGAAGTTACCAAATAGAGAAGATTTGCCTGAGAAATTGACATGGGACCTAACACCAATCTTTTCAAG
CGATCAAGAATTTGATAAAAAGTACGAAGAATTGACTGAAGAATTAAAAAATTCTGAGCATTATAAAGGAACATTAGGTA
ATGGAGCAACAGCATTTTTGGAGGCGCTTGAATTTGTCTTAACAATGTATCGTAAAGTTGAGCTTATTTATGTCTATTCC
CATTTAAAAAATGACCAAGATACGACAAATACGACGTATCAAGCATTGTATGCTCGCGCTGGAAGTTTACTTTCAAAAGT
GAGTGAAGCAATTGCTTGGTATGAGCCAGAAGTATTGCAACTTTCTGATGAGCAAATTTGGCAATATTTTGAAGAAGAAC
CAAAATTAGAAGTTTATCGTCATTATGTCAAACAAATGGTTGATAACCGCTCGCACATTTTATCAGCAGATCAAGAGGCA
TTACTTGCTGGAGCCGGAGAAATCTTTGGTGCTTCAAGTGGTACTTTTGCAGTGTTGAATAATGCTGATTTAGAGTTCCC
AACAATCACTGGTGAGAATGGTGAAAAGATCCAATTATCGCATGGTGTATATGGTCAATTATTAGAAAGCACCAATCGCG
AAGTACGTGAAGCGGCCTTCAAAGGGCTATACAGCGTATATGCACAATTTAGAAACACCTTTGCTTCCACACTTGGAACA
CATATCAAAGGGCACAACTTCAAAGCAAAAGCACGTCAATATGCTTCTGCCAGAGAAGCCGCATTGAGCAATAACCATAT
TCCTGAAAGTGTGTATGATACTTTAGTTACTGTCGTGAACAAACATTTGCCGTTATTGCATCGATATATGGAACTACGTA
AACGACTATTAAACGTAGATACATTACACATGTATGATCTGTATACGCCGGTATTAGGTGAAGCACCAATCAAATTTACG
TATGAAGAAGCAGTAGAAAAAGCGATCGAATCACTTGCGCCAATGGGAGAAGAATATCTTGCTGTCGTAAAAGAAGCATT
TTCAAACCGTTGGATTGATGTAGTCGAGAATAAAGGAAAACGTAGTGGCGCTTATTCTTCTGGTAGTTATGATACCAACC
CTTACATTCTGATGAACTGGCATGATACGTTGGATCAACTATTCACTTTGGTCCATGAAATGGGACATAGTGTCCACAGC
TATTTCACACGTTCGAATCAACCTTTCGTCTACGGCGATTACTCAATCTTCTTAGCCGAGATTGCGTCAACAACAAATGA
AAATATTTTGACCGAACATTTATTAGCGACCGAAGAAGATCCTCGGGTTCGTGCCTATGTCTTGAATCATTATTTAGATG
GTTTTAAAGGAACAATCTTCCGTCAAACACAATTTGCAGAGTTTGAACACTTCATGCACCAAGAAGATGCAAAAGGAACA
CCTTTGACGAGTGAGTACCTAAGTGAAAGTTATGGCGAATTAAATGCTAAGTATTATGGTCCGGCTGTTGAAAAAGATCC
AGAAATCAAAGATGAATGGGCACGTATCCCACATTTCTACTATAATTATTATGTCTATCAATACTCAACAGGATTTTCTG
CTGCATCGGCTTTAGCGAAGAAAATCTGGGAGAAAGAACCAGGCGCATTAGATGCTTACCTAACGTATCTAAAAGCAGGA
AACAGCGATTATCCAGTAGAAGTAATGAAGAAAGCTGGTGTGGACATGACTCAAGCAGCTTATATTGAAGATGCAATGGC
CGTGTTTGAACAACGATTAAATGAATTAGAAGCATTAGTGGAAGAATTATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.556

98.507

0.547

Multiple sequence alignment