Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EM4838_RS03390 Genome accession   NZ_CP018061
Coordinates   694147..695826 (+) Length   559 a.a.
NCBI ID   WP_071865925.1    Uniprot ID   -
Organism   Enterococcus mundtii strain DSM 4838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 689147..700826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM4838_RS03360 (EM4838_03270) - 689446..690300 (+) 855 WP_071865922.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  EM4838_RS03365 (EM4838_03275) xseA 690297..691637 (+) 1341 WP_071865923.1 exodeoxyribonuclease VII large subunit -
  EM4838_RS03370 (EM4838_03280) - 691639..691866 (+) 228 WP_010735998.1 exodeoxyribonuclease VII small subunit -
  EM4838_RS03375 (EM4838_03285) - 691863..692750 (+) 888 WP_071865924.1 polyprenyl synthetase family protein -
  EM4838_RS03380 (EM4838_03290) - 692759..693580 (+) 822 WP_010735996.1 TlyA family RNA methyltransferase -
  EM4838_RS03385 (EM4838_03295) - 693680..694129 (+) 450 WP_010735995.1 arginine repressor -
  EM4838_RS03390 (EM4838_03300) recN 694147..695826 (+) 1680 WP_071865925.1 DNA repair protein RecN Machinery gene
  EM4838_RS03395 (EM4838_03305) - 696683..698626 (+) 1944 WP_071865926.1 hypothetical protein -
  EM4838_RS03400 (EM4838_03310) - 698711..698827 (-) 117 WP_010735989.1 DUF4044 domain-containing protein -
  EM4838_RS03405 (EM4838_03315) - 698899..699855 (-) 957 WP_010735988.1 magnesium transporter CorA family protein -
  EM4838_RS03410 (EM4838_03320) - 700065..700433 (+) 369 WP_071865927.1 DUF3397 domain-containing protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62881.99 Da        Isoelectric Point: 4.4848

>NTDB_id=205525 EM4838_RS03390 WP_071865925.1 694147..695826(+) (recN) [Enterococcus mundtii strain DSM 4838]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPKQEGFEALM
EELGIESDGSNLIVRRDMSLAGKNVCRVNGHIVTLANLRRVGSYLVDIQGQNEHQELLQPESHLVLLDRFGDSTFQQKKR
AYQEAYQAYRELERKVRKIQQNEKNYVQRIDMLNFQQEEIAAAQLEVGEEEKLREERDKLSNYQKIVDGLATAYGALSEG
EQSSLDGVGMAVSEIQSIAHLDSEYEAIFDNIQSAYYLLQDAVGDMSRQIDLLELDENRLEEVTQRMETIRQLKRKYGDS
VEAILAYYEEITEELDSSDFTESQLDKMKNELTQKEEWAFQCAEELHQARKAIASDLEQSILRELKSLYMENTEFEVRFS
TQANGRLDEQGFDIVEFYITTNPGEPLKPLVKVASGGELSRVLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
LKISKYSQVLCITHLPQVAAVADYQYYIVKKVVGGRTQTSVSELAAAERENEIARMLAGSEITPLTIEHAKELLRLAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=205525 EM4838_RS03390 WP_071865925.1 694147..695826(+) (recN) [Enterococcus mundtii strain DSM 4838]
ATGCTACAAGAAATCAGTATCACCAATTTTGCGATTATTCCTGAATTGCGTTTGTCGTTTCATGAAGGAATGACAGCATT
AACAGGAGAAACCGGAGCCGGTAAGTCAATTATTATTGATGCTTTGGGCTTATTAGCAGGTGGTCGTGGATCAAGTGATT
ATATTCGTCAAGGTGCCGATAAATGTATTCTGGAAGGGTTATTTGAGTGGCCTAAACAAGAAGGTTTTGAAGCGCTGATG
GAAGAGTTAGGGATCGAGTCTGATGGCTCGAATCTGATCGTCCGTCGAGATATGTCTTTAGCAGGTAAGAATGTTTGTCG
AGTCAATGGACATATCGTGACATTAGCGAATTTGCGACGAGTTGGCAGTTATTTAGTGGATATCCAAGGTCAAAATGAGC
ATCAGGAATTATTACAACCTGAGTCACATCTTGTGTTACTTGATCGTTTTGGGGACTCGACATTCCAACAGAAAAAAAGA
GCGTACCAAGAAGCTTATCAAGCGTATCGTGAACTTGAAAGAAAAGTACGTAAGATCCAACAAAACGAAAAAAATTATGT
CCAACGTATTGATATGTTGAATTTCCAACAAGAAGAAATCGCAGCCGCTCAATTAGAAGTTGGTGAAGAAGAAAAACTTC
GAGAAGAGCGCGATAAATTAAGTAATTATCAAAAAATCGTCGATGGTTTAGCTACTGCTTATGGGGCGCTTAGTGAAGGT
GAACAAAGCAGTCTTGATGGGGTGGGAATGGCTGTTTCCGAGATCCAAAGTATTGCCCATCTTGATTCAGAGTATGAAGC
AATTTTTGATAATATCCAGAGTGCCTATTATTTATTGCAAGATGCAGTAGGGGATATGAGCAGGCAAATCGATCTGCTTG
AACTGGATGAGAATCGTTTGGAAGAAGTGACGCAACGCATGGAAACGATTCGTCAATTGAAGCGTAAATATGGCGATTCA
GTTGAAGCCATCTTAGCCTACTATGAAGAAATCACAGAAGAATTGGATTCATCGGATTTTACAGAAAGTCAACTTGATAA
AATGAAGAATGAACTGACCCAAAAAGAAGAGTGGGCGTTTCAATGTGCAGAAGAACTCCATCAAGCAAGAAAAGCGATCG
CAAGTGACTTAGAACAGTCGATTCTGCGCGAATTAAAGAGTCTTTATATGGAAAACACCGAATTTGAAGTTCGTTTTTCA
ACGCAAGCAAATGGACGCTTAGATGAGCAAGGTTTTGATATTGTCGAATTTTATATTACGACAAATCCAGGAGAACCATT
GAAGCCACTAGTCAAGGTAGCATCAGGTGGAGAATTGTCACGAGTATTACTTGCTCTGAAAACCATTTTTTCTTCTGAAC
AAGGTGTGACTAGTATCATTTTTGACGAAGTTGATACTGGTGTTAGTGGCAGAGTGGCACAAGCCATTGCGGATAAGATA
TTGAAAATATCCAAGTATTCCCAAGTACTTTGTATCACGCATCTCCCTCAAGTGGCTGCTGTAGCGGATTATCAATATTA
CATTGTAAAAAAAGTCGTCGGCGGAAGAACACAAACATCCGTCTCCGAATTAGCCGCAGCTGAAAGAGAAAATGAAATCG
CACGAATGTTAGCGGGGAGTGAAATCACGCCTTTAACGATCGAACACGCCAAAGAGTTGTTACGTTTGGCGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.526

100

0.515

Multiple sequence alignment