Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DR_RS09540 | Genome accession | NC_001263 |
| Coordinates | 1885147..1886367 (+) | Length | 406 a.a. |
| NCBI ID | WP_010888498.1 | Uniprot ID | Q9RTA2 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1880147..1891367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DR_RS09510 (DR_1857) | - | 1881637..1882056 (-) | 420 | WP_010888492.1 | organic hydroperoxide resistance protein | - |
| DR_RS09515 (DR_1858) | - | 1882162..1882914 (+) | 753 | WP_010888493.1 | TSUP family transporter | - |
| DR_RS09520 (DR_1859) | - | 1882952..1883563 (-) | 612 | WP_010888494.1 | hypothetical protein | - |
| DR_RS09525 (DR_1860) | - | 1883538..1883735 (-) | 198 | WP_164927979.1 | DUF4388 domain-containing protein | - |
| DR_RS09530 (DR_1861) | scpB | 1883839..1884387 (-) | 549 | WP_010888496.1 | SMC-Scp complex subunit ScpB | - |
| DR_RS09535 (DR_1862) | - | 1884384..1885076 (-) | 693 | WP_010888497.1 | L-threonylcarbamoyladenylate synthase | - |
| DR_RS09540 (DR_1863) | pilC | 1885147..1886367 (+) | 1221 | WP_010888498.1 | type II secretion system F family protein | Machinery gene |
| DR_RS09545 (DR_1864) | - | 1886419..1886772 (-) | 354 | WP_010888499.1 | DUF423 domain-containing protein | - |
| DR_RS09550 (DR_1865) | mraZ | 1887051..1887479 (+) | 429 | WP_010888500.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| DR_RS09555 (DR_1866) | rsmH | 1887476..1888414 (+) | 939 | WP_010888501.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| DR_RS09560 (DR_1867) | - | 1888415..1888777 (+) | 363 | WP_010888502.1 | hypothetical protein | - |
| DR_RS09565 (DR_1868) | - | 1888802..1890115 (+) | 1314 | WP_010888503.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| DR_RS09570 (DR_1869) | - | 1890122..1891126 (-) | 1005 | WP_010888504.1 | 4Fe-4S binding protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44323.84 Da Isoelectric Point: 7.3174
>NTDB_id=20552 DR_RS09540 WP_010888498.1 1885147..1886367(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=20552 DR_RS09540 WP_010888498.1 1885147..1886367(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
60.099 |
100 |
0.601 |