Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GT3921_RS15835 Genome accession   NZ_CP018058
Coordinates   3123139..3124962 (-) Length   607 a.a.
NCBI ID   WP_025948664.1    Uniprot ID   -
Organism   Geobacillus thermocatenulatus strain KCTC 3921     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118139..3129962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3921_RS15800 (GT3921_15270) - 3118735..3119373 (-) 639 WP_011230330.1 GTP pyrophosphokinase family protein -
  GT3921_RS15805 (GT3921_15275) - 3119526..3119903 (-) 378 WP_025948659.1 hypothetical protein -
  GT3921_RS15810 (GT3921_15280) - 3120039..3120632 (+) 594 WP_025948660.1 CYTH domain-containing protein -
  GT3921_RS15815 (GT3921_15285) - 3120629..3121252 (+) 624 WP_047753514.1 lytic transglycosylase domain-containing protein -
  GT3921_RS15820 (GT3921_15290) - 3121355..3121768 (+) 414 WP_025948662.1 globin -
  GT3921_RS15825 (GT3921_15295) spxH 3121761..3122654 (+) 894 WP_025948663.1 ClpXP adapter protein SpxH -
  GT3921_RS15830 (GT3921_15300) - 3122928..3123125 (+) 198 WP_013146066.1 hypothetical protein -
  GT3921_RS15835 (GT3921_15305) pepF 3123139..3124962 (-) 1824 WP_025948664.1 oligoendopeptidase F Regulator
  GT3921_RS15840 (GT3921_15310) - 3124962..3126290 (-) 1329 WP_025948665.1 competence protein CoiA family protein -
  GT3921_RS15845 (GT3921_15315) cls 3126475..3127983 (-) 1509 WP_025948666.1 cardiolipin synthase -
  GT3921_RS15850 (GT3921_15320) mecA 3128081..3128761 (-) 681 WP_025948667.1 adaptor protein MecA -
  GT3921_RS15855 (GT3921_15325) - 3128972..3129631 (+) 660 WP_025948668.1 TerC family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70315.52 Da        Isoelectric Point: 5.1533

>NTDB_id=205489 GT3921_RS15835 WP_025948664.1 3123139..3124962(-) (pepF) [Geobacillus thermocatenulatus strain KCTC 3921]
MTVEEKKTKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEAASAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKKILEEGKPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=205489 GT3921_RS15835 WP_025948664.1 3123139..3124962(-) (pepF) [Geobacillus thermocatenulatus strain KCTC 3921]
ATGACGGTGGAGGAAAAGAAAACGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCGATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGTCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCAGCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAACCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCATGTATTGTCG
GCAGAAGAAGAAGCGATATTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATTATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACTTGATCGCTACGATTCATGAACATTTGCCGCTGTTGCACCGGT
ACGTACGGCTGCGCAAACGAGTGCTTGGGCTTGATGAACTGCATATGTACGATTTATACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTTGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTAAAAGAGGGACTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAATTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCCCATTATTCGATCTTTGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGTTGTTGAACGACTATTTGCTGAAAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAAGCGTTGACGGCCGAGACGTTGACGTCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCACATTTTTATTACAACTACTACGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTCAGCAAGAAAATTTTGGAAGAAGGCAAACCGGCGGTGAGACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGTTAAAAAAAGCCGGCGTTGACATGACGAGCGCCGAGCCGAT
TCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

97.694

0.501

Multiple sequence alignment