Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CLC88_RS21700 Genome accession   NZ_CP023165
Coordinates   4299095..4299763 (-) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4294095..4304763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS21670 (CLC88_22225) rfaQ 4294273..4295331 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CLC88_RS21675 (CLC88_22230) waaA 4295744..4297021 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CLC88_RS21680 (CLC88_22235) coaD 4297029..4297508 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CLC88_RS21685 (CLC88_22240) mutM 4297547..4298356 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CLC88_RS21690 (CLC88_22245) rpmG 4298454..4298621 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CLC88_RS21695 (CLC88_22250) rpmB 4298642..4298878 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CLC88_RS21700 (CLC88_22255) radC 4299095..4299763 (-) 669 WP_001352775.1 DNA repair protein RadC Machinery gene
  CLC88_RS21705 (CLC88_22260) coaBC 4299935..4301155 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CLC88_RS21710 (CLC88_22265) dut 4301133..4301591 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CLC88_RS21715 (CLC88_22270) slmA 4301698..4302294 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CLC88_RS21720 (CLC88_22275) pyrE 4302331..4302972 (-) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  CLC88_RS21725 (CLC88_22280) rph 4303038..4303754 (-) 717 WP_001247093.1 ribonuclease PH -
  CLC88_RS21730 (CLC88_22285) yicC 4303881..4304744 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=205486 CLC88_RS21700 WP_001352775.1 4299095..4299763(-) (radC) [Escherichia coli O22:H8 strain RM10809-3]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=205486 CLC88_RS21700 WP_001352775.1 4299095..4299763(-) (radC) [Escherichia coli O22:H8 strain RM10809-3]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496