Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GT3921_RS12695 Genome accession   NZ_CP018058
Coordinates   2490461..2491408 (-) Length   315 a.a.
NCBI ID   WP_025951284.1    Uniprot ID   A0A0J0V3A2
Organism   Geobacillus thermocatenulatus strain KCTC 3921     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2485461..2496408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3921_RS12675 (GT3921_12235) - 2486742..2487470 (+) 729 WP_047753272.1 hypothetical protein -
  GT3921_RS12680 (GT3921_12240) - 2487506..2488465 (-) 960 WP_025951281.1 siderophore ABC transporter substrate-binding protein -
  GT3921_RS12685 (GT3921_12245) - 2488769..2489524 (-) 756 WP_047753261.1 ABC transporter ATP-binding protein -
  GT3921_RS12690 (GT3921_12250) - 2489518..2490468 (-) 951 WP_025951283.1 iron chelate uptake ABC transporter family permease subunit -
  GT3921_RS12695 (GT3921_12255) ceuB 2490461..2491408 (-) 948 WP_025951284.1 ABC transporter permease Machinery gene
  GT3921_RS12700 (GT3921_12260) - 2491929..2492510 (-) 582 WP_025951285.1 Uma2 family endonuclease -
  GT3921_RS12705 (GT3921_12265) gucD 2492645..2494111 (-) 1467 WP_047753262.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  GT3921_RS12710 (GT3921_12270) kdgD 2494296..2495231 (-) 936 WP_015374596.1 5-dehydro-4-deoxyglucarate dehydratase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34590.51 Da        Isoelectric Point: 9.4681

>NTDB_id=205483 GT3921_RS12695 WP_025951284.1 2490461..2491408(-) (ceuB) [Geobacillus thermocatenulatus strain KCTC 3921]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFAGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAMFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGVFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=205483 GT3921_RS12695 WP_025951284.1 2490461..2491408(-) (ceuB) [Geobacillus thermocatenulatus strain KCTC 3921]
ATGAAAAAATGGATGGTGCTTCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGTGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGCGGCTCATCAGCATTCTGATCGCCG
GATCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTCGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGCGGGGACGCTGCTGTTTATGACGGTTTTGGATCGTGTCAAGTACAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCCGTCACGACATTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGGCGTTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACCGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATCGTCACGATGTATTACGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
GTTTGGCGCTTTGTTTGTGCTGATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCAATCGGCTTGA
CGGTTGGGGTAATCGGAAGCGGCGTCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0V3A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483

Multiple sequence alignment