Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GT3921_RS07755 Genome accession   NZ_CP018058
Coordinates   1514478..1516199 (+) Length   573 a.a.
NCBI ID   WP_047752815.1    Uniprot ID   A0A0J0V5S2
Organism   Geobacillus thermocatenulatus strain KCTC 3921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509478..1521199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3921_RS07730 (GT3921_07505) - 1509734..1509964 (+) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -
  GT3921_RS07735 (GT3921_07510) - 1509968..1510861 (+) 894 WP_047752814.1 polyprenyl synthetase family protein -
  GT3921_RS07740 (GT3921_07515) dxs 1511109..1513001 (+) 1893 WP_047752831.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GT3921_RS07745 (GT3921_07520) - 1513005..1513853 (+) 849 WP_025948988.1 TlyA family RNA methyltransferase -
  GT3921_RS07750 (GT3921_07525) argR 1513903..1514352 (+) 450 WP_011231872.1 transcriptional regulator ArgR -
  GT3921_RS07755 (GT3921_07530) recN 1514478..1516199 (+) 1722 WP_047752815.1 DNA repair protein RecN Machinery gene
  GT3921_RS07760 (GT3921_07535) spoIVB 1516482..1517777 (+) 1296 WP_047752816.1 SpoIVB peptidase -
  GT3921_RS07765 (GT3921_07540) spo0A 1518128..1518946 (+) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  GT3921_RS07770 (GT3921_07545) - 1519098..1519244 (-) 147 WP_075261359.1 YycC family protein -
  GT3921_RS07775 (GT3921_07550) - 1519353..1520081 (+) 729 WP_025948991.1 glycerophosphodiester phosphodiesterase -
  GT3921_RS07780 (GT3921_07555) - 1520157..1520405 (-) 249 WP_025948992.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64349.77 Da        Isoelectric Point: 5.1077

>NTDB_id=205479 GT3921_RS07755 WP_047752815.1 1514478..1516199(+) (recN) [Geobacillus thermocatenulatus strain KCTC 3921]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYKRYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTLNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTNELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDIVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=205479 GT3921_RS07755 WP_047752815.1 1514478..1516199(+) (recN) [Geobacillus thermocatenulatus strain KCTC 3921]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTCGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCCATCATTATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATTGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCAGTGCTGCGCGACATCGGGGCGACGCTTGTGGATATTCACGGTCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGATGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCCCGTTACCGCGCCGTCTATAAGCGGTATGAGGAGCTTGGAAACAAATTAAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGTTGACGTTTCAGCTGCGCGAAATCGAACAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCTCTCTCTGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGTTGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AGTACGACCCCGAACGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTGAAGCAGCAGCTTGCTTTGGTGACGAACGAGTTGCTCACCGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CTCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGATGGCATCGATATCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTGGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCGATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.618

Multiple sequence alignment