Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CLC88_RS18300 Genome accession   NZ_CP023165
Coordinates   3591355..3591831 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3586355..3596831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS18265 (CLC88_18750) - 3586485..3587636 (-) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  CLC88_RS18270 (CLC88_18755) - 3587701..3588606 (+) 906 Protein_3493 IS3 family transposase -
  CLC88_RS18275 (CLC88_18760) - 3588617..3589051 (+) 435 Protein_3494 hypothetical protein -
  CLC88_RS18280 (CLC88_18765) - 3589127..3589582 (+) 456 Protein_3495 IrmA family protein -
  CLC88_RS18285 (CLC88_18770) - 3589661..3589894 (+) 234 WP_001119729.1 DUF905 family protein -
  CLC88_RS18290 (CLC88_18780) - 3589981..3590799 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  CLC88_RS18295 (CLC88_18785) - 3590854..3591339 (+) 486 WP_000849591.1 antirestriction protein -
  CLC88_RS18300 (CLC88_18790) radC 3591355..3591831 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  CLC88_RS18305 (CLC88_18795) - 3591894..3592115 (+) 222 WP_050864148.1 DUF987 domain-containing protein -
  CLC88_RS18310 (CLC88_18800) - 3592278..3592652 (+) 375 WP_001280952.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CLC88_RS18315 (CLC88_18805) - 3592699..3593076 (+) 378 WP_000854904.1 TA system toxin CbtA family protein -
  CLC88_RS18320 (CLC88_18810) - 3593073..3593561 (+) 489 WP_000779174.1 DUF5983 family protein -
  CLC88_RS18325 (CLC88_18815) - 3593573..3593770 (+) 198 WP_000839249.1 DUF957 domain-containing protein -
  CLC88_RS18330 (CLC88_18820) - 3593855..3594697 (+) 843 Protein_3505 DUF4942 domain-containing protein -
  CLC88_RS18335 (CLC88_18825) yghD 3595040..3595576 (-) 537 WP_000942786.1 GspM family type II secretion system protein YghD -
  CLC88_RS18340 (CLC88_18830) gspL 3595578..3596756 (-) 1179 WP_155705057.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=205471 CLC88_RS18300 WP_001186726.1 3591355..3591831(+) (radC) [Escherichia coli O22:H8 strain RM10809-3]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205471 CLC88_RS18300 WP_001186726.1 3591355..3591831(+) (radC) [Escherichia coli O22:H8 strain RM10809-3]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment