Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CLC88_RS16355 Genome accession   NZ_CP023165
Coordinates   3184900..3185415 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain RM10809-3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179900..3190415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC88_RS16330 (CLC88_16720) ygaZ 3180299..3181036 (+) 738 WP_050864158.1 L-valine exporter subunit YgaZ -
  CLC88_RS16335 (CLC88_16725) ygaH 3181026..3181361 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CLC88_RS16340 (CLC88_16730) emrR 3181452..3181982 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CLC88_RS16345 (CLC88_16735) emrA 3182109..3183281 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CLC88_RS16350 (CLC88_16740) emrB 3183298..3184836 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CLC88_RS16355 (CLC88_16745) luxS 3184900..3185415 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  CLC88_RS16360 (CLC88_16750) gshA 3185565..3187121 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CLC88_RS16365 (CLC88_16755) yqaA 3187194..3187622 (-) 429 WP_001287457.1 YqaA family protein -
  CLC88_RS16370 (CLC88_16760) yqaB 3187619..3188186 (-) 568 Protein_3116 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CLC88_RS16400 (CLC88_16790) csrA 3189779..3189964 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=205463 CLC88_RS16355 WP_001130207.1 3184900..3185415(-) (luxS) [Escherichia coli O22:H8 strain RM10809-3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=205463 CLC88_RS16355 WP_001130207.1 3184900..3185415(-) (luxS) [Escherichia coli O22:H8 strain RM10809-3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731