Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA696_RS24810 Genome accession   NZ_CP023142
Coordinates   4745128..4745604 (+) Length   158 a.a.
NCBI ID   WP_001366830.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4740128..4750604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS24775 (CA696_024775) - 4740619..4741605 (-) 987 WP_029396404.1 hypothetical protein -
  CA696_RS24780 (CA696_024780) - 4741712..4742596 (+) 885 WP_053287869.1 GTPase -
  CA696_RS24785 (CA696_024785) - 4742715..4743392 (+) 678 WP_001097362.1 hypothetical protein -
  CA696_RS24790 (CA696_024790) - 4743398..4743631 (+) 234 WP_053287870.1 DUF905 family protein -
  CA696_RS24800 (CA696_024800) - 4743733..4744551 (+) 819 WP_053287871.1 DUF932 domain-containing protein -
  CA696_RS24805 (CA696_024805) - 4744633..4745112 (+) 480 WP_000860074.1 antirestriction protein -
  CA696_RS24810 (CA696_024810) radC 4745128..4745604 (+) 477 WP_001366830.1 RadC family protein Machinery gene
  CA696_RS24815 (CA696_024815) - 4745667..4745888 (+) 222 WP_095454389.1 DUF987 domain-containing protein -
  CA696_RS31135 - 4745903..4746535 (+) 633 Protein_4584 antitoxin of toxin-antitoxin stability system -
  CA696_RS24825 (CA696_024825) - 4746582..4746938 (+) 357 WP_095454386.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CA696_RS24830 (CA696_024830) - 4747029..4747406 (+) 378 WP_053287712.1 TA system toxin CbtA family protein -
  CA696_RS24835 (CA696_024835) - 4747403..4747891 (+) 489 WP_053287711.1 DUF5983 family protein -
  CA696_RS24840 (CA696_024840) - 4747911..4748108 (+) 198 WP_053287710.1 DUF957 domain-containing protein -
  CA696_RS24845 (CA696_024845) - 4748192..4749040 (+) 849 WP_053287709.1 DUF4942 domain-containing protein -
  CA696_RS24855 (CA696_024855) ulaD 4749312..4749962 (-) 651 WP_000056771.1 3-keto-L-gulonate-6-phosphate decarboxylase UlaD -
  CA696_RS24860 (CA696_024860) ulaC 4749976..4750440 (-) 465 WP_000776521.1 PTS ascorbate transporter subunit IIA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17729.34 Da        Isoelectric Point: 7.2519

>NTDB_id=205398 CA696_RS24810 WP_001366830.1 4745128..4745604(+) (radC) [Escherichia coli strain CFSAN061770]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205398 CA696_RS24810 WP_001366830.1 4745128..4745604(+) (radC) [Escherichia coli strain CFSAN061770]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment