Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | BSU_25750 | Genome accession | NC_000964 |
| Coordinates | 2652387..2652797 (-) | Length | 136 a.a. |
| NCBI ID | NP_390452.1 | Uniprot ID | P42983 |
| Organism | Bacillus subtilis subsp. subtilis str. 168 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2647753..2699243 | 2652387..2652797 | within | 0 |
Gene organization within MGE regions
Location: 2647753..2699243
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSU_25700 (BSU25700) | yqeF | 2647920..2648651 (-) | 732 | NP_390447.1 | putative lipoprotein; putative esterase | - |
| BSU_25710 (BSU25710) | cwlH | 2648903..2649655 (-) | 753 | NP_390448.1 | N-acetylmuramoyl-L-alanine amidase | - |
| BSU_25720 (BSU25720) | yqeD | 2649842..2650468 (+) | 627 | NP_390449.1 | conserved membrane protein of unknown function | - |
| BSU_25730 (BSU25730) | yqeC | 2650487..2651380 (-) | 894 | NP_390450.1 | putative catabolic 6-phospho-gluconate dehydrogenase (NAD[+]-dependent) | - |
| BSU_25740 (BSU25740) | yqeB | 2651632..2652354 (+) | 723 | NP_390451.2 | hypothetical protein | - |
| BSU_25750 (BSU25750) | nucA/comI | 2652387..2652797 (-) | 411 | NP_390452.1 | sporulation-specific matrix degrading exported DNase | Machinery gene |
| BSU_25770 (BSU25770) | spoIVCA | 2653371..2654873 (-) | 1503 | NP_390454.2 | site-specific DNA recombinase; skin element | - |
| BSU_25780 (BSU25780) | arsC | 2655322..2655741 (-) | 420 | NP_390455.1 | thioredoxin-coupled arsenate reductase; skin element | - |
| BSU_25790 (BSU25790) | arsB | 2655753..2656793 (-) | 1041 | NP_390456.2 | arsenite efflux transporter; skin element | - |
| BSU_25800 (BSU25800) | yqcK | 2656816..2657256 (-) | 441 | NP_390457.2 | putative thiol lyase | - |
| BSU_25810 (BSU25810) | arsR | 2657317..2657634 (-) | 318 | NP_390458.1 | transcriptional regulator (ArsR-arsenate); skin element | - |
| BSU_25820 (BSU25820) | yqcI | 2658006..2658770 (-) | 765 | NP_390459.2 | conserved protein of unknown function; skin element | - |
| BSU_25830 (BSU25830) | rapE | 2659213..2660340 (+) | 1128 | NP_390460.2 | response regulator aspartate phosphatase; skin element | - |
| BSU_25840 (BSU25840) | phrE | 2660330..2660464 (+) | 135 | NP_390461.1 | regulator peptide of the activity of phosphatase RapE; skin element | - |
| BSU_25850 (BSU25850) | yqzI | 2660574..2660732 (+) | 159 | NP_390462.1 | hypothetical protein; skin element | - |
| BSU_25860 (BSU25860) | rttG | 2661102..2662697 (+) | 1596 | NP_390463.1 | phage ribonuclease toxin; skin element | - |
| BSU_25870 (BSU25870) | rttF | 2662712..2663290 (+) | 579 | NP_390464.1 | antitoxin factor of ribonuclease toxin RttG; skin element | - |
| BSU_25875 (BSU25875) | - | 2663408..2663554 (+) | 147 | YP_009513979.1 | hypothetical protein | - |
| BSU_25880 (BSU25880) | yqxJ | 2663551..2663913 (-) | 363 | NP_390465.1 | hypothetical protein; skin element | - |
| BSU_25890 (BSU25890) | yqxI | 2663929..2664408 (-) | 480 | NP_390466.1 | hypothetical protein; skin element | - |
| BSU_25900 (BSU25900) | cwlA | 2664573..2665391 (-) | 819 | NP_390467.1 | N-acetylmuramoyl-L-alanine amidase; skin element | - |
| BSU_25910 (BSU25910) | yqxH | 2665436..2665858 (-) | 423 | NP_390468.1 | putative holin; skin element | - |
| BSU_25920 (BSU25920) | yqxG | 2665903..2666796 (-) | 894 | NP_390469.1 | putative phage-related lytic exoenzyme; skin element | - |
| BSU_25930 (BSU25930) | yqcE | 2666884..2667048 (-) | 165 | NP_390470.1 | conserved phage protein of unknown function; skin element | - |
| BSU_25940 (BSU25940) | yqcD | 2667045..2667380 (-) | 336 | NP_390471.1 | conserved phage protein of unknown function; skin element | - |
| BSU_25950 (BSU25950) | yqcC | 2667390..2668490 (-) | 1101 | NP_390472.2 | conserved phage protein of unknown function; skin element | - |
| BSU_25960 (BSU25960) | yqcB | 2668493..2668765 (-) | 273 | NP_390473.1 | conserved phage protein of unknown function; skin element | - |
| BSU_25970 (BSU25970) | yqcA | 2668762..2669340 (-) | 579 | NP_390474.2 | putative phage tail baseplate protein; skin element | - |
| BSU_25980 (BSU25980) | yqbT | 2669324..2670370 (-) | 1047 | NP_390475.1 | putative phage baseplate assembly protein; skin element | - |
| BSU_25990 (BSU25990) | yqbS | 2670363..2670788 (-) | 426 | NP_390476.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26000 (BSU26000) | yqbR | 2670801..2671064 (-) | 264 | NP_390477.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26010 (BSU26010) | yqbQ | 2671061..2672041 (-) | 981 | NP_390478.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26020 (BSU26020) | yqbP | 2672054..2672713 (-) | 660 | NP_390479.1 | putative phage murein-binding protein; skin element | - |
| BSU_26030 (BSU26030) | yqbO | 2672706..2677463 (-) | 4758 | NP_390480.2 | putative tape measure protein; skin element | - |
| BSU_26050 (BSU26050) | txpA | 2678240..2678419 (+) | 180 | NP_390482.1 | toxic peptide of toxin-antitoxin system; skin element | - |
| BSU_26055 (BSU26055) | bsrH | 2678799..2678888 (+) | 90 | YP_009513980.1 | skin region; type I toxin | - |
| BSU_26060 (BSU26060) | yqbM | 2679142..2679585 (-) | 444 | NP_390483.2 | putative tail tube protein; skin element | - |
| BSU_26075 (BSU26075) | yqbK | 2679588..2680988 (-) | 1401 | NP_390485.2 | putative phage tail sheath protein; skin element | - |
| BSU_26089 (BSU26089) | yqzN | 2680989..2681180 (-) | 192 | YP_003097763.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26090 (BSU26090) | yqbJ | 2681177..2681614 (-) | 438 | NP_390486.2 | conserved phage protein of unknown function; skin element | - |
| BSU_26100 (BSU26100) | yqbI | 2681627..2682130 (-) | 504 | NP_390487.1 | putative phage tail component; skin element | - |
| BSU_26110 (BSU26110) | yqbH | 2682127..2682489 (-) | 363 | NP_390488.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26120 (BSU26120) | yqbG | 2682486..2682881 (-) | 396 | NP_390489.2 | conserved phage protein of unknown function; skin element | - |
| BSU_26130 (BSU26130) | yqbF | 2682885..2683196 (-) | 312 | NP_390490.1 | hypothetical protein; skin element | - |
| BSU_26140 (BSU26140) | yqbE | 2683207..2684142 (-) | 936 | NP_390491.2 | putative phage capsid protein; skin element | - |
| BSU_26150 (BSU26150) | yqbD | 2684161..2685129 (-) | 969 | NP_390492.2 | putative nucleic acid-binding protein; skin element | - |
| BSU_26160 (BSU26160) | yqbC | 2685162..2685815 (-) | 654 | NP_390493.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26170 (BSU26170) | yqbB | 2685856..2686773 (-) | 918 | NP_390494.1 | putative phage head morphogenesis protein; skin element | - |
| BSU_26180 (BSU26180) | yqbA | 2686770..2688302 (-) | 1533 | NP_390495.1 | putative phage capsid protein; skin element | - |
| BSU_26190 (BSU26190) | yqaT | 2688306..2689601 (-) | 1296 | NP_390496.1 | putative phage-related terminase large subunit; skin element | - |
| BSU_26200 (BSU26200) | yqaS | 2689594..2690313 (-) | 720 | NP_390497.1 | putative phage-related terminase small subunit; skin element | - |
| BSU_26210 (BSU26210) | yqaR | 2690381..2690845 (-) | 465 | NP_390498.1 | hypothetical protein; skin element | - |
| BSU_26220 (BSU26220) | yqaQ | 2690989..2691444 (-) | 456 | NP_390499.1 | putative phage DNA-binding protein; skin element | - |
| BSU_26230 (BSU26230) | yqaP | 2691642..2692571 (+) | 930 | NP_390500.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26240 (BSU26240) | yqaO | 2692645..2692851 (-) | 207 | NP_390501.1 | conserved phage protein of unknown function; skin element | - |
| BSU_26250 (BSU26250) | yqaN | 2692933..2693361 (-) | 429 | NP_390502.1 | putative Holliday junction resolvase; skin element | - |
| BSU_26259 (BSU26259) | yqzO | 2693457..2693606 (-) | 150 | YP_003097764.1 | hypothetical protein; skin element | - |
| BSU_26260 (BSU26260) | sknM | 2693597..2694538 (-) | 942 | NP_390503.3 | putative helicase loader; skin element | - |
| BSU_26270 (BSU26270) | yqaL | 2694420..2695097 (-) | 678 | NP_390504.2 | putative DNA-binding protein; skin element | - |
| BSU_26280 (BSU26280) | yqaK | 2695173..2696027 (-) | 855 | NP_390505.1 | putative DNA recombination protein; skin element | - |
| BSU_26290 (BSU26290) | yqaJ | 2696030..2696989 (-) | 960 | NP_390506.1 | putative nuclease; skin element | - |
| BSU_26300 (BSU26300) | yqaI | 2697095..2697289 (-) | 195 | NP_390507.1 | hypothetical protein; skin element | - |
| BSU_26305 (BSU26305) | - | 2697249..2697422 (-) | 174 | YP_009513981.1 | hypothetical protein; skin element | - |
| BSU_26310 (BSU26310) | sknH | 2697419..2697676 (-) | 258 | NP_390508.1 | skin element; factor binding to DnaA | - |
| BSU_26320 (BSU26320) | yqaG | 2697673..2698242 (-) | 570 | NP_390509.1 | putative transcriptional regulator; skin element | - |
| BSU_26330 (BSU26330) | yqdA | 2698316..2698456 (-) | 141 | NP_390510.1 | hypothetical protein; skin element | - |
| BSU_26340 (BSU26340) | yqaF | 2698486..2698716 (-) | 231 | NP_390511.1 | putative transcriptional regulator; skin element | - |
| BSU_26350 (BSU26350) | sknR | 2698893..2699243 (+) | 351 | NP_390512.1 | skin element; transcriptional repressor of yqaF-yqaN operon (Xre family) | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=20537 BSU_25750 NP_390452.1 2652387..2652797(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. 168]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=20537 BSU_25750 NP_390452.1 2652387..2652797(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |